Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G403900.1 | Wheat | nucleus | 98.62 | 98.96 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 98.62 | 98.28 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 95.63 | 87.86 |
| Os05t0566900-01 | Rice | extracellular | 73.68 | 75.23 |
| KXG22544 | Sorghum | nucleus | 65.98 | 67.06 |
| Zm00001d009591_P006 | Maize | nucleus | 62.64 | 63.59 |
| Zm00001d039041_P007 | Maize | nucleus | 64.71 | 62.42 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.52 | 60.76 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 57.7 | 59.55 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 15.17 | 58.93 |
| CDY61561 | Canola | cytosol | 4.02 | 53.03 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.52 | 45.28 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 42.3 | 44.07 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 42.64 | 43.7 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 41.61 | 41.23 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 42.18 | 40.33 |
| Solyc02g071180.2.1 | Tomato | nucleus | 37.36 | 39.02 |
| PGSC0003DMT400007972 | Potato | nucleus | 37.47 | 39.0 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 38.97 | 38.92 |
| KRH59101 | Soybean | nucleus | 36.21 | 37.28 |
| CDY48333 | Canola | nucleus | 35.06 | 37.06 |
| Solyc03g005750.2.1 | Tomato | nucleus | 35.86 | 37.01 |
| KRH42968 | Soybean | nucleus | 35.52 | 36.92 |
| CDY15632 | Canola | nucleus | 33.22 | 36.77 |
| CDY43334 | Canola | nucleus | 34.71 | 36.74 |
| AT1G29370.1 | Thale cress | nucleus | 34.94 | 36.58 |
| Bra030134.1-P | Field mustard | nucleus | 32.87 | 36.57 |
| KRH36716 | Soybean | nucleus | 35.17 | 36.52 |
| CDX90188 | Canola | nucleus | 34.48 | 36.5 |
| Bra010832.1-P | Field mustard | nucleus | 34.48 | 36.5 |
| AT1G29350.1 | Thale cress | nucleus | 34.6 | 36.22 |
| Bra021900.1-P | Field mustard | nucleus | 33.68 | 35.69 |
| KRH11725 | Soybean | nucleus | 34.37 | 35.6 |
| CDY43685 | Canola | nucleus | 33.91 | 35.54 |
| CDX94662 | Canola | nucleus | 32.87 | 35.53 |
| Bra032310.1-P | Field mustard | nucleus | 34.83 | 35.27 |
| CDX99817 | Canola | nucleus | 24.94 | 35.0 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 34.02 | 34.74 |
| Bra022970.1-P | Field mustard | nucleus | 32.3 | 34.73 |
| CDX84653 | Canola | nucleus | 32.18 | 34.44 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.39 | 34.43 |
| CDY61562 | Canola | nucleus | 29.77 | 33.99 |
| CDX78828 | Canola | nucleus | 26.21 | 32.66 |
| CDY61669 | Canola | nucleus | 27.7 | 32.57 |
| Bra013287.1-P | Field mustard | nucleus | 28.62 | 31.92 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 24.02 | 31.19 |
| AT4G18150.1 | Thale cress | nucleus | 25.98 | 29.82 |
| CDY08888 | Canola | nucleus | 15.75 | 23.74 |
| CDX76544 | Canola | nucleus | 15.17 | 23.2 |
| Bra021022.1-P | Field mustard | nucleus | 15.98 | 22.38 |
| CDY11787 | Canola | nucleus | 17.82 | 21.03 |
| AT5G46380.2 | Thale cress | nucleus | 15.63 | 20.54 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 19.2 | 20.27 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 15.29 | 15.36 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G411700.1 | EnsemblPlantsGene:TraesCS1D01G411700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:473261687..473270104
Molecular Weight (calculated)
92570.9 Da
IEP (calculated)
5.019
GRAVY (calculated)
-0.712
Length
870 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGGGAGG GKGAAAAGPV PQASRKLVQS LKEIVNRPDA EIYAALRECS MDPDEAVSRL LSQDTFQEVK SKRDKKKEVK ETPEPRSRAA NNATSRGVRG
101: GPDRGGRNNS AYNSSIDNMT SRSSVSGSGM PSTNSTQKQT VPSSSVNKNL VADAPSVPPQ TSSGFQHGWS GPPGQLSMAD IVKMGGRPQA QGKPSTKTVV
201: TADKGYAGQY PSLPTTVNQN AKQSASTVAS TELDQGLPSA QDSVLVKDHS HTAADNKQKY DNDWSPQDDP TAGNQSSIPE TSGDPSLFEA PLHPSTHVAD
301: VVYLHENSYL DDNISAAMRS GNASERHLDH YGGNSEYNDG LLQNSSTYLA QTHSHIEDQA EESNADVSAA ANFQGLSLHD EELAATKFAE DNPAVIIPDH
401: LQVANTGCAG LSFGSFGSGA FSGLLPPPKS TENNVELPIV EESEPIDHTD TRDQDFYEIP PNSPPNENLE EIMGANTENL DVPSVQQPDV LRQEILDDPS
501: GVQYNLPSVS SHAYANPAQP NAMDAMQGSN QAHTLSHLSS LLQSNTLQQH NLLGSNMAPL RDLDFGLSPL LAAQAQSMGA RYNSAAPTTT GMQEPMKPGV
601: FSNTQSTQNL PSTSIQMAPS LPQQLVHPYS QPTLPIAPFA NMIGANMIGY NPYLAQNYPA YLPSTAFQQA YSSNGQFHQS AAAVPGAGMK YSMPQYKNNM
701: SAANLQQQQQ ASSVISGYAG FGSSSNLPGN FALNQNAAPP SANLGFDEAL SAQYKEANQY MALQQQGDNS AMWLHGAGSR TASALPPTQF YGYQGQSQQQ
801: GAFRQAQQPQ QPSQYGGHGY PAFYHSQGGM AQEHHPQNPA DGALNGYQAA PQQQQQQQPS HQSWQQHANY
101: GPDRGGRNNS AYNSSIDNMT SRSSVSGSGM PSTNSTQKQT VPSSSVNKNL VADAPSVPPQ TSSGFQHGWS GPPGQLSMAD IVKMGGRPQA QGKPSTKTVV
201: TADKGYAGQY PSLPTTVNQN AKQSASTVAS TELDQGLPSA QDSVLVKDHS HTAADNKQKY DNDWSPQDDP TAGNQSSIPE TSGDPSLFEA PLHPSTHVAD
301: VVYLHENSYL DDNISAAMRS GNASERHLDH YGGNSEYNDG LLQNSSTYLA QTHSHIEDQA EESNADVSAA ANFQGLSLHD EELAATKFAE DNPAVIIPDH
401: LQVANTGCAG LSFGSFGSGA FSGLLPPPKS TENNVELPIV EESEPIDHTD TRDQDFYEIP PNSPPNENLE EIMGANTENL DVPSVQQPDV LRQEILDDPS
501: GVQYNLPSVS SHAYANPAQP NAMDAMQGSN QAHTLSHLSS LLQSNTLQQH NLLGSNMAPL RDLDFGLSPL LAAQAQSMGA RYNSAAPTTT GMQEPMKPGV
601: FSNTQSTQNL PSTSIQMAPS LPQQLVHPYS QPTLPIAPFA NMIGANMIGY NPYLAQNYPA YLPSTAFQQA YSSNGQFHQS AAAVPGAGMK YSMPQYKNNM
701: SAANLQQQQQ ASSVISGYAG FGSSSNLPGN FALNQNAAPP SANLGFDEAL SAQYKEANQY MALQQQGDNS AMWLHGAGSR TASALPPTQF YGYQGQSQQQ
801: GAFRQAQQPQ QPSQYGGHGY PAFYHSQGGM AQEHHPQNPA DGALNGYQAA PQQQQQQQPS HQSWQQHANY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.