Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P25510_001 | Banana | nucleus | 67.26 | 68.38 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 70.79 | 66.04 |
| KRH38470 | Soybean | endoplasmic reticulum | 6.12 | 65.82 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 63.84 | 61.73 |
| CDY61561 | Canola | cytosol | 4.59 | 59.09 |
| Zm00001d035703_P001 | Maize | nucleus | 16.14 | 50.74 |
| Zm00001d017358_P001 | Maize | nucleus | 6.36 | 49.09 |
| Os05t0566900-01 | Rice | extracellular | 44.76 | 44.6 |
| KXG33052 | Sorghum | nucleus | 42.99 | 44.35 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 45.11 | 43.97 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 4.59 | 43.82 |
| Os01t0663800-01 | Rice | plasma membrane | 42.87 | 42.77 |
| KXG22544 | Sorghum | nucleus | 43.11 | 42.76 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 43.7 | 42.64 |
| Zm00001d011517_P002 | Maize | nucleus | 42.05 | 42.5 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 43.35 | 42.45 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 43.46 | 42.27 |
| Zm00001d043962_P001 | Maize | nucleus | 41.81 | 42.16 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 41.93 | 42.13 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 41.7 | 41.99 |
| KRH59101 | Soybean | nucleus | 41.46 | 41.66 |
| KRH42968 | Soybean | nucleus | 40.99 | 41.58 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 39.81 | 41.52 |
| PGSC0003DMT400007972 | Potato | nucleus | 40.52 | 41.15 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 42.05 | 41.03 |
| Zm00001d009591_P006 | Maize | nucleus | 41.11 | 40.72 |
| Solyc02g071180.2.1 | Tomato | nucleus | 39.93 | 40.7 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.06 | 40.57 |
| KRH36716 | Soybean | nucleus | 39.93 | 40.45 |
| KRH11725 | Soybean | nucleus | 39.93 | 40.36 |
| Solyc03g005750.2.1 | Tomato | nucleus | 38.99 | 39.26 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 43.35 | 38.86 |
| Zm00001d039041_P007 | Maize | nucleus | 40.99 | 38.58 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 6.83 | 37.91 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 9.89 | 37.5 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 36.87 | 37.04 |
| Zm00001d004950_P001 | Maize | nucleus | 13.43 | 36.77 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 36.87 | 36.74 |
| Zm00001d039138_P012 | Maize | nucleus | 35.81 | 36.67 |
| CDY43334 | Canola | nucleus | 35.22 | 36.37 |
| Bra030134.1-P | Field mustard | nucleus | 33.45 | 36.32 |
| KXG22612 | Sorghum | nucleus | 35.34 | 36.06 |
| CDY15632 | Canola | nucleus | 33.22 | 35.88 |
| CDY48333 | Canola | nucleus | 34.75 | 35.84 |
| AT1G29370.1 | Thale cress | nucleus | 34.98 | 35.74 |
| AT1G29350.1 | Thale cress | nucleus | 34.86 | 35.62 |
| Os05t0581800-01 | Rice | nucleus | 35.57 | 35.45 |
| Bra021900.1-P | Field mustard | nucleus | 34.28 | 35.44 |
| CDX94662 | Canola | nucleus | 33.57 | 35.4 |
| CDX90188 | Canola | nucleus | 34.28 | 35.4 |
| Bra010832.1-P | Field mustard | nucleus | 33.92 | 35.04 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.72 | 34.91 |
| CDY43685 | Canola | nucleus | 34.04 | 34.82 |
| Bra022970.1-P | Field mustard | nucleus | 32.74 | 34.36 |
| Bra032310.1-P | Field mustard | nucleus | 34.63 | 34.23 |
| CDX84653 | Canola | nucleus | 32.74 | 34.19 |
| Zm00001d009683_P004 | Maize | nucleus | 34.16 | 34.08 |
| CDY61669 | Canola | nucleus | 29.09 | 33.38 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 33.33 | 33.18 |
| CDX99817 | Canola | nucleus | 24.15 | 33.06 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 33.1 | 32.6 |
| Bra013287.1-P | Field mustard | nucleus | 29.8 | 32.44 |
| CDY61562 | Canola | nucleus | 28.39 | 31.63 |
| CDX78828 | Canola | nucleus | 25.91 | 31.52 |
| AT4G18150.1 | Thale cress | nucleus | 28.03 | 31.4 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 24.26 | 30.75 |
| CDY08888 | Canola | nucleus | 16.96 | 24.96 |
| CDX76544 | Canola | nucleus | 16.49 | 24.6 |
| Bra021022.1-P | Field mustard | nucleus | 16.73 | 22.87 |
| AT5G46380.2 | Thale cress | nucleus | 17.67 | 22.66 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 20.97 | 21.22 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 21.67 | 20.98 |
| CDY11787 | Canola | nucleus | 17.55 | 20.22 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 20.02 | 19.72 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 14.13 | 18.69 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 17.67 | 17.67 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 13.55 | 14.86 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P14940_001 | EnsemblPlants:GSMUA_Achr4T14940_001 | EnsemblPlantsGene:GSMUA_Achr4G14940_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI00029695A3 | UniProt:M0SP09 | MapMan:35.2 | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G14940_001]
Coordinates
chr4:+:11246249..11259020
Molecular Weight (calculated)
90124.0 Da
IEP (calculated)
5.405
GRAVY (calculated)
-0.508
Length
849 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGGGGGP GSKGNGAASA APIPAGSRKL VQSLKEIVNC SETEIYAMLR ECNMDPNEAV HRLLSQDAFH EVRSKRDKKK EIREPPESRS RTVNNSSSRG
101: ARGSADLDYG ASKGKLIHKN ENGMSAVLFT ASVLESSMIS SNLPQKPTAP SNSASMGDTI QAANIGDGIS TLVQSSSGFQ NSWLGKPGHL SMADIVKMGR
201: PQGKPSGIPV VASERSDMAQ KEAKQSSTAV LPSEADKLTD SFQESTQVSE FSYDIGIAEG QQISYDGWPL DEQPTESGST PPEISGASPV YANSSELASS
301: IDGNNSHIAD SRPISISSDM QILVDNSADA DAYHLNEGLL KSTNSYNSRR LELDHHEGSF PAGDSVDLSS AAVNLGQLSL HEETRTEPTV VSPAVIIPDH
401: LRVTNADCAH LSFGSFVSGA FSGSFPSKQL KSNLEVAPVM SDASSTDNSD MRCDEQLNPT LIENIASRSS TGSENLDVPS ASQTEVVKND PLDATHEIQY
501: NLPSVSNYAF PSSTQPNATS YAYPQENSQM QSLSPFPSLM QPNSLQNSLL AAGIPSLRDF DMSLSPLLTT QSMPTRHITS LSSIGGQTIS MSEALNPGLF
601: SNPQSTPQSL TSTTMFTSPA LHQHLPVPHY SQPALPLGHF ANMISYPPFL PQSYTYLPSF QQAYTANSPF HQSPGAVPGA GMKYSQPQFK NSLSVTSLPQ
701: ASAIASAYGG LGNSANIPGG FALNHHTSGS ASTTTGFDES LSLQNKEESH YMPPQQSENP NLWLHSAAGS RAMPALPAST FYNYQGQSQQ SGFRQSPQAS
801: HLGALGYPNL YHSPAGLSRE HQQNTGEGNL NGPPTTQAHP ANQIWQHGY
101: ARGSADLDYG ASKGKLIHKN ENGMSAVLFT ASVLESSMIS SNLPQKPTAP SNSASMGDTI QAANIGDGIS TLVQSSSGFQ NSWLGKPGHL SMADIVKMGR
201: PQGKPSGIPV VASERSDMAQ KEAKQSSTAV LPSEADKLTD SFQESTQVSE FSYDIGIAEG QQISYDGWPL DEQPTESGST PPEISGASPV YANSSELASS
301: IDGNNSHIAD SRPISISSDM QILVDNSADA DAYHLNEGLL KSTNSYNSRR LELDHHEGSF PAGDSVDLSS AAVNLGQLSL HEETRTEPTV VSPAVIIPDH
401: LRVTNADCAH LSFGSFVSGA FSGSFPSKQL KSNLEVAPVM SDASSTDNSD MRCDEQLNPT LIENIASRSS TGSENLDVPS ASQTEVVKND PLDATHEIQY
501: NLPSVSNYAF PSSTQPNATS YAYPQENSQM QSLSPFPSLM QPNSLQNSLL AAGIPSLRDF DMSLSPLLTT QSMPTRHITS LSSIGGQTIS MSEALNPGLF
601: SNPQSTPQSL TSTTMFTSPA LHQHLPVPHY SQPALPLGHF ANMISYPPFL PQSYTYLPSF QQAYTANSPF HQSPGAVPGA GMKYSQPQFK NSLSVTSLPQ
701: ASAIASAYGG LGNSANIPGG FALNHHTSGS ASTTTGFDES LSLQNKEESH YMPPQQSENP NLWLHSAAGS RAMPALPAST FYNYQGQSQQ SGFRQSPQAS
801: HLGALGYPNL YHSPAGLSRE HQQNTGEGNL NGPPTTQAHP ANQIWQHGY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.