Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33052 | Sorghum | nucleus | 70.27 | 72.66 |
| Zm00001d035703_P001 | Maize | nucleus | 23.03 | 72.59 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 70.98 | 71.48 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 69.68 | 70.34 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 67.22 | 70.27 |
| Zm00001d043962_P001 | Maize | nucleus | 69.45 | 70.19 |
| Zm00001d011517_P002 | Maize | nucleus | 69.21 | 70.12 |
| Zm00001d017358_P001 | Maize | nucleus | 8.93 | 69.09 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 69.92 | 68.39 |
| Os05t0566900-01 | Rice | extracellular | 63.1 | 63.03 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.64 | 60.76 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 9.87 | 54.9 |
| CDY61561 | Canola | cytosol | 4.11 | 53.03 |
| Zm00001d004950_P001 | Maize | nucleus | 18.8 | 51.61 |
| Solyc09g018250.2.1 | Tomato | plastid | 6.35 | 50.94 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 45.01 | 45.87 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 42.77 | 42.87 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 41.72 | 40.43 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 41.13 | 40.18 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 41.95 | 39.23 |
| KRH36716 | Soybean | nucleus | 38.07 | 38.66 |
| KRH11725 | Soybean | nucleus | 38.07 | 38.57 |
| Solyc02g071180.2.1 | Tomato | nucleus | 37.6 | 38.42 |
| PGSC0003DMT400007972 | Potato | nucleus | 37.72 | 38.4 |
| KRH59101 | Soybean | nucleus | 37.96 | 38.22 |
| KRH42968 | Soybean | nucleus | 37.25 | 37.87 |
| Solyc03g005750.2.1 | Tomato | nucleus | 36.9 | 37.25 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 9.17 | 36.79 |
| Os09t0261400-01 | Rice | plasma membrane | 3.41 | 36.25 |
| CDY48333 | Canola | nucleus | 33.73 | 34.87 |
| Os05t0581800-01 | Rice | nucleus | 34.55 | 34.51 |
| CDY43334 | Canola | nucleus | 32.9 | 34.06 |
| CDX90188 | Canola | nucleus | 32.78 | 33.94 |
| AT1G29370.1 | Thale cress | nucleus | 33.14 | 33.94 |
| Bra030134.1-P | Field mustard | nucleus | 31.14 | 33.89 |
| Bra021900.1-P | Field mustard | nucleus | 32.67 | 33.86 |
| AT1G29350.1 | Thale cress | nucleus | 33.02 | 33.81 |
| CDX94662 | Canola | nucleus | 31.96 | 33.79 |
| Bra010832.1-P | Field mustard | nucleus | 32.55 | 33.7 |
| CDY43685 | Canola | nucleus | 32.78 | 33.61 |
| CDY15632 | Canola | nucleus | 31.02 | 33.59 |
| Bra032310.1-P | Field mustard | nucleus | 33.84 | 33.53 |
| CDX99817 | Canola | nucleus | 23.97 | 32.9 |
| Bra022970.1-P | Field mustard | nucleus | 30.79 | 32.39 |
| CDY61669 | Canola | nucleus | 28.08 | 32.3 |
| CDX84653 | Canola | nucleus | 30.67 | 32.1 |
| Bra013287.1-P | Field mustard | nucleus | 29.02 | 31.67 |
| CDX78828 | Canola | nucleus | 25.73 | 31.38 |
| CDY61562 | Canola | nucleus | 27.97 | 31.23 |
| AT4G18150.1 | Thale cress | nucleus | 25.73 | 28.89 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 22.09 | 28.06 |
| CDY08888 | Canola | nucleus | 15.39 | 22.7 |
| CDX76544 | Canola | nucleus | 15.04 | 22.5 |
| Bra021022.1-P | Field mustard | nucleus | 15.51 | 21.26 |
| AT5G46380.2 | Thale cress | nucleus | 16.33 | 21.0 |
| CDY11787 | Canola | nucleus | 17.39 | 20.08 |
| Os06t0206100-01 | Rice | nucleus | 15.75 | 15.69 |
| Os03t0411000-01 | Rice | nucleus | 10.93 | 12.06 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4327865 | ProteinID:BAD72338.1 | ProteinID:BAD72381.1 | ProteinID:BAF05702.1 | ProteinID:BAS73556.1 |
| ProteinID:BAS73557.1 | ProteinID:EEE55130.1 | InterPro:GIP1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:Os01g0663800 | EnsemblPlants:Os01t0663800-01 | PFAM:PF06972 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | UniProt:Q5SN38 |
| SUPFAM:SSF46934 | InterPro:UBA-like_sf | UniParc:UPI000046D49D | RefSeq:XP_015614925.1 | SEG:seg | : |
Description
Protein of unknown function DUF1296 family protein. (Os01t0663800-01);Hypothetical conserved gene. (Os01t0663800-02)
Coordinates
chr1:-:27102158..27110014
Molecular Weight (calculated)
89896.7 Da
IEP (calculated)
4.724
GRAVY (calculated)
-0.617
Length
851 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGGGGGG GGGGGRGAAA GPVPGSARKL VQGLKEIVNR PDAEIYAALR DCGMDPDEAV SRLLSQDTFQ EVKSKRDKKK EVNKEALEPK SRGAVNSNSR
101: ATRAGADRSG RSSSVQSGSS GADNMSSRSS ILGPGVLATN STQKQTVPSS TVNKDVLHDG SFGAMQPSSG FQNSWCGVPG QMSMADIVKM GRPQVRSSSK
201: PVASTDNAYS GQTSSFSSVV NQNPNKSAST APPTTFEQRF PVLQDPIPQV KNSSHASADN HETQESDWFQ QDGTLPGSQL TVPETSRDIS LPVASLESST
301: LVADDANSYN NSHVGESSSA IPSDRHLEII DGNNHFNNGL LHNSSAYQSR GNHYDDNDDD DDEAEVSNVD VESASANIQH LSLQTEDLVA SKSTEDNPAV
401: IIPDHLQLAN ADCGHLSFGS FGSGAFSGLL PSKVHKNGVE EVPVPDESPS VDQEDVRNQD NNVALNSSTN GDVEARIGTS MENTDEPSVS QPDILTQGAV
501: DVSSLQYNLP SVSDHVYSNT TQPSTMESSQ GDIQVQHLPQ FSSLLQANTL HNNLLGSNLP NLRDFDFSPL LSTQLATKYN PPVPTTSLPA ISMQETLKPG
601: GFSNAQPTQN LPSASIPSGP PLPQQLSVHP YPQPTLPLGP FSNLVGYPYL PQNYYLPSAA FQQSFSSNGP FHQSAATTGV PGVSMKYSMP QYKGSLPATS
701: PPQPSSVVSG FGGFGSSNNI PGNFGLNQNV PSAPTTMGFE EALSTQFKDN SQYIALQQND NSAMWLHGAA GSRAVSAVPP GNFYGFQGQN QPGGFRQGQQ
801: PSQYGGLGYP SFYQSQAGLP QEHPQNLTEG TLNSSQTTPS QPSHQIWQHI Y
101: ATRAGADRSG RSSSVQSGSS GADNMSSRSS ILGPGVLATN STQKQTVPSS TVNKDVLHDG SFGAMQPSSG FQNSWCGVPG QMSMADIVKM GRPQVRSSSK
201: PVASTDNAYS GQTSSFSSVV NQNPNKSAST APPTTFEQRF PVLQDPIPQV KNSSHASADN HETQESDWFQ QDGTLPGSQL TVPETSRDIS LPVASLESST
301: LVADDANSYN NSHVGESSSA IPSDRHLEII DGNNHFNNGL LHNSSAYQSR GNHYDDNDDD DDEAEVSNVD VESASANIQH LSLQTEDLVA SKSTEDNPAV
401: IIPDHLQLAN ADCGHLSFGS FGSGAFSGLL PSKVHKNGVE EVPVPDESPS VDQEDVRNQD NNVALNSSTN GDVEARIGTS MENTDEPSVS QPDILTQGAV
501: DVSSLQYNLP SVSDHVYSNT TQPSTMESSQ GDIQVQHLPQ FSSLLQANTL HNNLLGSNLP NLRDFDFSPL LSTQLATKYN PPVPTTSLPA ISMQETLKPG
601: GFSNAQPTQN LPSASIPSGP PLPQQLSVHP YPQPTLPLGP FSNLVGYPYL PQNYYLPSAA FQQSFSSNGP FHQSAATTGV PGVSMKYSMP QYKGSLPATS
701: PPQPSSVVSG FGGFGSSNNI PGNFGLNQNV PSAPTTMGFE EALSTQFKDN SQYIALQQND NSAMWLHGAA GSRAVSAVPP GNFYGFQGQN QPGGFRQGQQ
801: PSQYGGLGYP SFYQSQAGLP QEHPQNLTEG TLNSSQTTPS QPSHQIWQHI Y
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.