Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g071180.2.1 | Tomato | nucleus | 95.45 | 95.8 |
| CDY61561 | Canola | cytosol | 5.26 | 66.67 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.62 | 59.49 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 59.93 | 57.52 |
| KRH59101 | Soybean | nucleus | 52.51 | 51.95 |
| KRH42968 | Soybean | nucleus | 51.91 | 51.85 |
| KRH36716 | Soybean | nucleus | 51.32 | 51.19 |
| KRH11725 | Soybean | nucleus | 50.96 | 50.71 |
| Zm00001d035703_P001 | Maize | nucleus | 16.15 | 50.0 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 12.56 | 49.53 |
| Zm00001d017358_P001 | Maize | nucleus | 6.46 | 49.09 |
| Bra022970.1-P | Field mustard | nucleus | 45.81 | 47.34 |
| CDX84653 | Canola | nucleus | 45.33 | 46.62 |
| AT1G29370.1 | Thale cress | nucleus | 45.93 | 46.21 |
| AT1G29350.1 | Thale cress | nucleus | 45.81 | 46.09 |
| Bra021900.1-P | Field mustard | nucleus | 44.5 | 45.31 |
| CDY15632 | Canola | nucleus | 42.46 | 45.17 |
| CDX94662 | Canola | nucleus | 43.3 | 44.97 |
| Bra030134.1-P | Field mustard | nucleus | 41.99 | 44.88 |
| CDY48333 | Canola | nucleus | 44.02 | 44.71 |
| CDY43685 | Canola | nucleus | 44.38 | 44.7 |
| CDX99817 | Canola | nucleus | 33.13 | 44.68 |
| CDY43334 | Canola | nucleus | 43.78 | 44.53 |
| CDX90188 | Canola | nucleus | 43.66 | 44.4 |
| CDY61562 | Canola | nucleus | 40.31 | 44.23 |
| Bra010832.1-P | Field mustard | nucleus | 43.42 | 44.16 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 42.58 | 42.63 |
| Bra032310.1-P | Field mustard | nucleus | 43.66 | 42.49 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 7.66 | 41.83 |
| CDY61669 | Canola | nucleus | 36.6 | 41.35 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 41.15 | 40.52 |
| KXG33052 | Sorghum | nucleus | 39.11 | 39.73 |
| Bra013287.1-P | Field mustard | nucleus | 36.84 | 39.49 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 41.39 | 39.41 |
| CDX78828 | Canola | nucleus | 32.66 | 39.11 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 31.22 | 38.96 |
| Os05t0566900-01 | Rice | extracellular | 39.47 | 38.73 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 41.99 | 38.57 |
| Zm00001d011517_P002 | Maize | nucleus | 38.52 | 38.33 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 38.52 | 38.11 |
| KXG22544 | Sorghum | nucleus | 38.88 | 37.97 |
| Zm00001d043962_P001 | Maize | nucleus | 38.16 | 37.89 |
| AT4G18150.1 | Thale cress | nucleus | 34.21 | 37.73 |
| Os01t0663800-01 | Rice | plasma membrane | 38.4 | 37.72 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 39.0 | 37.6 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 37.8 | 37.49 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 39.0 | 37.47 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 39.11 | 37.46 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 36.36 | 37.35 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 38.52 | 37.01 |
| Zm00001d009591_P006 | Maize | nucleus | 36.36 | 35.47 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 39.35 | 34.74 |
| Zm00001d039041_P007 | Maize | nucleus | 37.32 | 34.59 |
| Zm00001d039138_P012 | Maize | nucleus | 32.78 | 33.05 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 33.13 | 32.78 |
| KXG22612 | Sorghum | nucleus | 32.18 | 32.33 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 32.66 | 32.04 |
| Zm00001d004950_P001 | Maize | nucleus | 11.84 | 31.94 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 8.37 | 31.25 |
| Os05t0581800-01 | Rice | nucleus | 31.7 | 31.1 |
| Zm00001d009683_P004 | Maize | nucleus | 31.22 | 30.67 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 29.67 | 29.07 |
| CDY11787 | Canola | nucleus | 25.36 | 28.77 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 29.55 | 28.65 |
| CDY08888 | Canola | nucleus | 19.74 | 28.6 |
| CDX76544 | Canola | nucleus | 19.02 | 27.94 |
| Bra021022.1-P | Field mustard | nucleus | 19.62 | 26.41 |
| AT5G46380.2 | Thale cress | nucleus | 19.26 | 24.32 |
| PGSC0003DMT400057353 | Potato | nucleus | 17.11 | 18.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400007972 | EnsemblPlantsGene:PGSC0003DMG400003082 | EntrezGene:102591371 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | PGSC:PGSC0003DMG400003082 |
| RefSeq:XP_006355598.1 | SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0002965078 | UniProt:M0ZTU8 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400003082]
Coordinates
chr2:-:30375779..30385411
Molecular Weight (calculated)
89092.5 Da
IEP (calculated)
5.406
GRAVY (calculated)
-0.708
Length
836 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRNNGGVG VQSIPAGSRK MVQSLKEIVN CPEPEIYAML KECNMDPNEA VNRLLTQDTF HEVKSKREKR KESKDTTESR PRGAISSSGR GSRGGAERYV
101: GRGGSESTRP IPGYRKENGS NTSNLTSTLG VSGSNISRRA TTISDIAANE SKKSAPTAVD GVSSVCETSS GYQPTWGGVP GQVSMADIVK MGRPQSKVPS
201: APNVSHHNVN ANQNHIQGLP SGASHQNTQW SDDHTTKVSE VHREPQHLST DEEWPLIEPP SVASQTSISE PPADSELHPD PANLSYDRIN HQNEIDEVQG
301: TDNCTIENLG SPPSRRLQED NAGGASIYEN DLYGYQNQNH TFDHQQVEDV NDSVSSVAAN LQQLNVQDDG GVPPEGDGPS VVIPDHLQVQ TADCSHLSFG
401: SFGSGIGGSF SGPLASAPVT STLEDAPKEV DGSSVGHSGS RASEYYGDES LRHASESNLY HRTNASSVNY DSSSASQPEP LTSETNEQGN QYSYPSSAAG
501: YTYESAQQLT AAFSQPQTSS QMQNLTPFSN VMAFTNSLPS TLSAANVHAG RETDLSYLPF SATQAMAMKY GSSVSSIGGS TISMPESLKS AGFPSAQSTQ
601: QTLSGTSVTT GPTVPQHLAV HPYNQPTLPL GPFGNMISYP FMPQSYTYMP SAFQQPFAGN SNYHQSLAAV LPQYKNSVSV SSLPQPASVA SAYGGFGNTA
701: SIPGNFPMNP SAAPSGTNLS YDDMLSSQYK DTNHLMSLQQ SENSAMWLHG PGSRTMSAVP ANTYYAFQGQ NQQSSGFRQA QQPLQNHGSL GYPNFYHSQA
801: GISLEHQQQN PRDGSLGGGS QGQPKPSQQL WQSGGY
101: GRGGSESTRP IPGYRKENGS NTSNLTSTLG VSGSNISRRA TTISDIAANE SKKSAPTAVD GVSSVCETSS GYQPTWGGVP GQVSMADIVK MGRPQSKVPS
201: APNVSHHNVN ANQNHIQGLP SGASHQNTQW SDDHTTKVSE VHREPQHLST DEEWPLIEPP SVASQTSISE PPADSELHPD PANLSYDRIN HQNEIDEVQG
301: TDNCTIENLG SPPSRRLQED NAGGASIYEN DLYGYQNQNH TFDHQQVEDV NDSVSSVAAN LQQLNVQDDG GVPPEGDGPS VVIPDHLQVQ TADCSHLSFG
401: SFGSGIGGSF SGPLASAPVT STLEDAPKEV DGSSVGHSGS RASEYYGDES LRHASESNLY HRTNASSVNY DSSSASQPEP LTSETNEQGN QYSYPSSAAG
501: YTYESAQQLT AAFSQPQTSS QMQNLTPFSN VMAFTNSLPS TLSAANVHAG RETDLSYLPF SATQAMAMKY GSSVSSIGGS TISMPESLKS AGFPSAQSTQ
601: QTLSGTSVTT GPTVPQHLAV HPYNQPTLPL GPFGNMISYP FMPQSYTYMP SAFQQPFAGN SNYHQSLAAV LPQYKNSVSV SSLPQPASVA SAYGGFGNTA
701: SIPGNFPMNP SAAPSGTNLS YDDMLSSQYK DTNHLMSLQQ SENSAMWLHG PGSRTMSAVP ANTYYAFQGQ NQQSSGFRQA QQPLQNHGSL GYPNFYHSQA
801: GISLEHQQQN PRDGSLGGGS QGQPKPSQQL WQSGGY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.