Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0261400-01 | Rice | plasma membrane | 4.38 | 42.5 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 36.04 | 35.62 |
| KRH73929 | Soybean | nucleus | 31.27 | 31.81 |
| KRH14203 | Soybean | nucleus | 31.27 | 31.44 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 32.17 | 29.8 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 33.08 | 29.3 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 29.34 | 27.67 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 29.21 | 27.55 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 29.09 | 27.43 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 29.6 | 26.68 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 17.63 | 25.66 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 29.09 | 25.36 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 19.95 | 24.14 |
| KXG24955 | Sorghum | nucleus | 25.23 | 24.11 |
| Zm00001d050112_P011 | Maize | nucleus | 25.74 | 23.61 |
| PGSC0003DMT400007972 | Potato | nucleus | 18.4 | 17.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057353 | EnsemblPlantsGene:PGSC0003DMG400022269 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | PGSC:PGSC0003DMG400022269 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI00029615BF | UniProt:M1C0W5 | MapMan:35.2 | : | : |
Description
Hydroxyproline-rich glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022269]
Coordinates
chr7:+:55769163..55774525
Molecular Weight (calculated)
83803.8 Da
IEP (calculated)
8.634
GRAVY (calculated)
-0.594
Length
777 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGVSRIII PSNVRKTIDD IKEIAAGKHT DEDIYAMLKE CNMDPNDTAQ KLLYLDTFHE VKKKRDRKKT KASSQTSDDY RWMSGMQRRA RDGREIISAN
101: YITDSKYGTS TWDANGRRYI KKENGVNSSK DRISKASMPP ARKTEDASIH PSKEFAVEVA GDDPSHVSRV TSFVNVNKLA KVSTVPPNLI NHHLNLDPGP
201: TPTPTPTFAP GTRFKDKVFI SIPNELVKST TSASVSGVYS SSSDPVLVPA LNPRNPGTVG TIKREIGGQR TVTDYTVSPA NKRTSDACQD APQNTNAVTR
301: TVNYINTTGP KESWGVSVTA IQPVANHESQ HSKQVKGHSG VLPSQAAAVA KGENLPSVSK PNSSVEQAVP QLDMKLEKLN VSARCQPVIF PNNLQVPESF
401: RSGLTFGSLD PQLDQSISCG KDSMPVETVP ANDTTSMEPG SYEDASSAAQ RGDYPDNLLS HQHGSENISP FEVSGASPVY DPSKSEKCPP SAGSQLPLLQ
501: TPPDYSLGFV PPMLGPHLGG NSQAPSTLGS NQPVAQPIGL GQSSVSVPSH LFPLVRQPFP PNYMPYNPYI PHLYMPQSAH QFLGPSGFPQ QPSPANFYMS
601: PSVTAAGVKL PLQSLYKPAA IAGNTNHFGI PTGYSSYGSS TVSYSGTPAL VCSASNENLT TPDLKEKNVY SMHKQNEGSH YRNSAPGRDQ SMLQTNYFYN
701: IPQDQHVAVA PAHSSNNSYL GINASQTIVA QSNAQPLAQQ PQTVARSGDS GLPTSGAFQQ PQANIHWNNK LLNRENV
101: YITDSKYGTS TWDANGRRYI KKENGVNSSK DRISKASMPP ARKTEDASIH PSKEFAVEVA GDDPSHVSRV TSFVNVNKLA KVSTVPPNLI NHHLNLDPGP
201: TPTPTPTFAP GTRFKDKVFI SIPNELVKST TSASVSGVYS SSSDPVLVPA LNPRNPGTVG TIKREIGGQR TVTDYTVSPA NKRTSDACQD APQNTNAVTR
301: TVNYINTTGP KESWGVSVTA IQPVANHESQ HSKQVKGHSG VLPSQAAAVA KGENLPSVSK PNSSVEQAVP QLDMKLEKLN VSARCQPVIF PNNLQVPESF
401: RSGLTFGSLD PQLDQSISCG KDSMPVETVP ANDTTSMEPG SYEDASSAAQ RGDYPDNLLS HQHGSENISP FEVSGASPVY DPSKSEKCPP SAGSQLPLLQ
501: TPPDYSLGFV PPMLGPHLGG NSQAPSTLGS NQPVAQPIGL GQSSVSVPSH LFPLVRQPFP PNYMPYNPYI PHLYMPQSAH QFLGPSGFPQ QPSPANFYMS
601: PSVTAAGVKL PLQSLYKPAA IAGNTNHFGI PTGYSSYGSS TVSYSGTPAL VCSASNENLT TPDLKEKNVY SMHKQNEGSH YRNSAPGRDQ SMLQTNYFYN
701: IPQDQHVAVA PAHSSNNSYL GINASQTIVA QSNAQPLAQQ PQTVARSGDS GLPTSGAFQQ PQANIHWNNK LLNRENV
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.