Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P09430_001 | Banana | cytosol | 7.64 | 75.28 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 73.32 | 74.59 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 70.7 | 73.9 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 30.67 | 50.37 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 36.03 | 49.22 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 45.95 | 48.91 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 45.61 | 48.54 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 49.49 | 48.44 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 45.5 | 48.42 |
| KRH16977 | Soybean | nucleus | 48.0 | 47.95 |
| KRH72609 | Soybean | nucleus | 47.78 | 47.4 |
| Solyc07g045230.2.1 | Tomato | nucleus | 45.15 | 45.21 |
| CDY22126 | Canola | nucleus | 41.96 | 44.93 |
| Bra040021.1-P | Field mustard | nucleus | 42.08 | 44.89 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 45.38 | 44.67 |
| KXG24955 | Sorghum | nucleus | 41.39 | 44.65 |
| AT3G07660.1 | Thale cress | nucleus | 41.96 | 43.76 |
| CDY28028 | Canola | nucleus | 39.91 | 43.32 |
| Solyc05g018750.2.1 | Tomato | nucleus | 40.02 | 43.01 |
| CDY35953 | Canola | nucleus | 39.79 | 42.82 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 38.31 | 42.75 |
| Bra029667.1-P | Field mustard | nucleus | 39.57 | 42.01 |
| Zm00001d050112_P011 | Maize | nucleus | 40.14 | 41.56 |
| KRH14203 | Soybean | nucleus | 32.16 | 36.48 |
| KRH73929 | Soybean | nucleus | 31.24 | 35.86 |
| PGSC0003DMT400057353 | Potato | nucleus | 29.3 | 33.08 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 24.52 | 25.32 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 20.75 | 23.51 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 20.98 | 21.67 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 20.18 | 21.2 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 20.87 | 20.84 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 21.44 | 20.66 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P12040_001 | EnsemblPlants:GSMUA_Achr3T12040_001 | EnsemblPlantsGene:GSMUA_Achr3G12040_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI000294A343 | UniProt:M0SDX1 | MapMan:35.2 | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G12040_001]
Coordinates
chr3:-:8921093..8938065
Molecular Weight (calculated)
92655.9 Da
IEP (calculated)
6.321
GRAVY (calculated)
-0.538
Length
877 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGARVSI PAGVRRTIQN IKEIAGNHSD EEIYAMLKEC GMDPNETAQK LLLQDPFHEV KRKRDKRKET VREPADSRWR PGLQGRGGRG GRGNYPRSVP
101: SDAAAGRNVT SGKDNGLNQG TDKANTSSSS TIPDTENSNI NHPMLSQGSN VSDVSGIAQW DKSSGAVATK PGISGSVLKD VNHGFASGRP DSDQCSSDKT
201: AAPVLEIYAS VSDPVLVPSL DTHKACELEA VKQVTGIQSS IVETATSRAA SRDISGYKLS YISGKGSSDS SDAFIHGKIQ IKPQGPGKSE LSEKSHSKSS
301: FSGSIGSRPS SNYNNRSQHL SGSQKAPVPN KEWKPKTIQA NAAQASEMTD TSDVLVVAEA VAQSLPAACS VTTEEPAVKL EKKVNELKLT EKQHVIIPNH
401: LQVPESERHG LSFGSFDANF ELNMVAANGP ARVEIDTPFS ESPEIEETIE KPSLSIHTAS SAAQEADSPD HPQSPEQVPD SYSTEEAGVS ASKSAAAEYD
501: QSKQQANVSP EGPQNLVIQS APSYPSLGMT PQVLGSQFSP FENSEPQARD SSRLPNFLVH QPYDPSTSYY TPFYRPTGDA DGRISPFLAS SASSRYNANI
601: AVLPAQTGQT SQENTNSAVL STVGSTLATQ AAGAMQGSVA IPQQPVPVFR QPAGLHLSHY PPNYIPYNQY FSPFYVPPPT LHHFLSGAAF PQQPPTGSMY
701: QTPGAATPAT AVKYSIPQYK AGANIGNSAI VGLPTVYGTY SSTPAGYTSG PAASSGNSTA NEDLGSSQFK ENSVYVPGQQ SEGSAVWIPA PGRDISALQA
801: SSFYSIPPQG QHMTFAAAQA GHGAFSGIYP PTPTVAASVH PLLQQSQTVA GAVEMLGPPA GVYQQPQRAQ INWTNNY
101: SDAAAGRNVT SGKDNGLNQG TDKANTSSSS TIPDTENSNI NHPMLSQGSN VSDVSGIAQW DKSSGAVATK PGISGSVLKD VNHGFASGRP DSDQCSSDKT
201: AAPVLEIYAS VSDPVLVPSL DTHKACELEA VKQVTGIQSS IVETATSRAA SRDISGYKLS YISGKGSSDS SDAFIHGKIQ IKPQGPGKSE LSEKSHSKSS
301: FSGSIGSRPS SNYNNRSQHL SGSQKAPVPN KEWKPKTIQA NAAQASEMTD TSDVLVVAEA VAQSLPAACS VTTEEPAVKL EKKVNELKLT EKQHVIIPNH
401: LQVPESERHG LSFGSFDANF ELNMVAANGP ARVEIDTPFS ESPEIEETIE KPSLSIHTAS SAAQEADSPD HPQSPEQVPD SYSTEEAGVS ASKSAAAEYD
501: QSKQQANVSP EGPQNLVIQS APSYPSLGMT PQVLGSQFSP FENSEPQARD SSRLPNFLVH QPYDPSTSYY TPFYRPTGDA DGRISPFLAS SASSRYNANI
601: AVLPAQTGQT SQENTNSAVL STVGSTLATQ AAGAMQGSVA IPQQPVPVFR QPAGLHLSHY PPNYIPYNQY FSPFYVPPPT LHHFLSGAAF PQQPPTGSMY
701: QTPGAATPAT AVKYSIPQYK AGANIGNSAI VGLPTVYGTY SSTPAGYTSG PAASSGNSTA NEDLGSSQFK ENSVYVPGQQ SEGSAVWIPA PGRDISALQA
801: SSFYSIPPQG QHMTFAAAQA GHGAFSGIYP PTPTVAASVH PLLQQSQTVA GAVEMLGPPA GVYQQPQRAQ INWTNNY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.