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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P14940_001 Banana nucleus 66.04 70.79
GSMUA_Achr7P25510_001 Banana nucleus 64.73 70.54
GSMUA_Achr3P31170_001 Banana nucleus 64.07 66.4
KRH38470 Soybean endoplasmic reticulum 5.16 59.49
CDY61561 Canola cytosol 4.07 56.06
Zm00001d017358_P001 Maize nucleus 6.37 52.73
Zm00001d035703_P001 Maize nucleus 14.62 49.26
GSMUA_Achr1P09430_001 Banana cytosol 4.51 46.07
VIT_10s0003g02740.t01 Wine grape nucleus 43.08 45.01
Solyc09g018250.2.1 Tomato plastid 5.16 44.34
KXG33052 Sorghum nucleus 39.78 43.99
Os05t0566900-01 Rice extracellular 40.66 43.43
Zm00001d011517_P002 Maize nucleus 40.0 43.33
KXG22544 Sorghum nucleus 40.66 43.22
TraesCS3D01G241600.2 Wheat nucleus 39.78 42.94
TraesCS3B01G269500.1 Wheat nucleus 39.78 42.84
KRH42968 Soybean nucleus 39.12 42.53
KRH59101 Soybean nucleus 39.45 42.49
TraesCS1D01G411700.1 Wheat nucleus 40.33 42.18
TraesCS3A01G241400.3 Wheat nucleus 37.69 42.14
PGSC0003DMT400007972 Potato nucleus 38.57 41.99
TraesCS1A01G403900.1 Wheat nucleus 40.0 41.98
Os01t0663800-01 Rice plasma membrane 39.23 41.95
Zm00001d043962_P001 Maize nucleus 38.68 41.81
HORVU3Hr1G060080.3 Barley cytosol, nucleus, vacuole 39.89 41.72
TraesCS1B01G433400.1 Wheat nucleus 40.0 41.7
Solyc02g071180.2.1 Tomato nucleus 37.8 41.3
KRH36716 Soybean nucleus 38.02 41.29
Zm00001d009591_P006 Maize nucleus 38.35 40.72
KRH11725 Soybean nucleus 37.36 40.48
Solyc03g005750.2.1 Tomato nucleus 37.47 40.45
Zm00001d035814_P001 Maize cytosol, mitochondrion, nucleus, plastid, vacuole 6.7 39.87
Zm00001d039041_P007 Maize nucleus 39.45 39.8
Zm00001d015193_P001 Maize nucleus, plastid 9.67 39.29
HORVU1Hr1G089280.1 Barley nucleus 40.44 38.86
VIT_19s0014g03260.t01 Wine grape nucleus 9.01 38.68
Bra030134.1-P Field mustard nucleus 32.86 38.24
CDY43334 Canola nucleus 34.29 37.96
AT1G29370.1 Thale cress nucleus 34.4 37.67
AT1G29350.1 Thale cress nucleus 34.4 37.67
CDY15632 Canola nucleus 32.53 37.66
TraesCS1A01G420300.1 Wheat nucleus 34.84 37.51
CDY48333 Canola nucleus 33.85 37.42
CDX90188 Canola nucleus 33.63 37.23
TraesCS1D01G428100.1 Wheat nucleus 34.84 37.21
CDX94662 Canola nucleus 32.86 37.14
Bra010832.1-P Field mustard nucleus 33.52 37.1
Zm00001d039138_P012 Maize nucleus 33.52 36.79
Zm00001d004950_P001 Maize nucleus 12.42 36.45
KXG22612 Sorghum nucleus 33.08 36.18
Bra021900.1-P Field mustard nucleus 32.64 36.18
Bra022970.1-P Field mustard nucleus 32.09 36.09
Bra032310.1-P Field mustard nucleus 33.74 35.74
Os05t0581800-01 Rice nucleus 33.41 35.68
CDX84653 Canola nucleus 31.76 35.55
CDY43685 Canola nucleus 32.42 35.54
CDX99817 Canola nucleus 23.96 35.16
Zm00001d009683_P004 Maize nucleus 31.98 34.2
CDX78828 Canola nucleus 25.93 33.81
CDY61669 Canola nucleus 27.47 33.78
TraesCS1B01G450700.1 Wheat nucleus 31.65 33.76
Bra013287.1-P Field mustard nucleus 28.9 33.72
HORVU1Hr1G091730.18 Barley mitochondrion 31.76 33.53
CDY61562 Canola nucleus 27.58 32.94
AT4G18150.1 Thale cress nucleus 26.92 32.32
CDY37665 Canola cytosol, nucleus, plastid 23.74 32.24
CDY08888 Canola nucleus 15.27 24.09
CDX76544 Canola nucleus 14.84 23.73
CDY11787 Canola nucleus 18.46 22.8
Bra021022.1-P Field mustard nucleus 15.05 22.06
AT5G46380.2 Thale cress nucleus 15.82 21.75
GSMUA_Achr3P12040_001 Banana nucleus 20.66 21.44
GSMUA_Achr7P06080_001 Banana nucleus 19.45 21.1
GSMUA_Achr1P19270_001 Banana nucleus 19.12 20.19
GSMUA_Achr1P09420_001 Banana cytosol, nucleus, peroxisome 12.42 17.6
GSMUA_Achr3P07830_001 Banana nucleus 16.15 17.31
GSMUA_Achr3P20190_001 Banana nucleus 12.75 14.99
Protein Annotations
EnsemblPlants:GSMUA_Achr4P07880_001EnsemblPlants:GSMUA_Achr4T07880_001EnsemblPlantsGene:GSMUA_Achr4G07880_001GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:GIP1InterPro:UBA-like_sfPANTHER:PTHR12758PANTHER:PTHR12758:SF20PFAM:PF06972SEG:seg
SUPFAM:SSF46934UniParc:UPI0002963226UniProt:M0SM05MapMan:35.2::
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G07880_001]
Coordinates
chr4:+:5853388..5867567
Molecular Weight (calculated)
97279.3 Da
IEP (calculated)
5.995
GRAVY (calculated)
-0.540
Length
910 amino acids
Sequence
(BLAST)
001: MRSGGGGAGS RGNGSAASVT AAPIPSGSRK LVQSLKEIVN CPEPEIYAML RECDMDPNEA IHRLLSQDTF HEVKSKRDKK KEIREPPESR SRTLNNSSIR
101: GARSSTDRGG RTTSSQSSSV DHGTGKGRLM HKKENGTSPV LTSSVPESST VSSNPPRRPT VPSDSASVGI TIQATSAADG ICISMQSSSG YKNCWSGMPG
201: HVSMADIVRM GRPQGKPSNM PLVGSERSVA QNSVMSKMLH HDAKPSLTAV LPSESDKTLE SFQESTHFSE NSHDVRTAEG QHNSHDGWSR VDEQPLESGS
301: TTPEISGASA QSELASSNLV IDGTNLHIDP HSEEIQMPEE GLNFKSLPAE SRATSVSGMQ IQVDSSVDAP HLSEGLLKSS IPYLSQRLEL DHLEGSFPDG
401: DVRVKISSAA VNLGQLSLHE ERSTNTIEAN PSVIIPDHLR VTNADCAHLS FGSFVSGTFS GSFPTKPLKS NLEVAPVVAD ASMIEDSDAR NHEYYSDGQL
501: TPPPVAEDSD VRNHEYFSDG QHTTTLTENV ASISGTVSEN PDAPSASQSE VVRNDPLDAT HEIQYNLPAG ANYAFPSSTE PNATTYTYLQ GNAQMQSLSP
601: FSTLLQSHNL QNSMLAPNIP PLRDFDLPLS PLLTTQSIPT RYSTTLSSIS GSTISMSEAL NPGVFSNSQS IPQSLPSTTM LTSASLPQHL PVRYSQPALP
701: LSHFANMMSY SFLPQSYPYL PSFQQAYAAN SPFHQSHHVA PSAGMSYSQP QFKSSLSATS LPQVSSIASA YGGFGSAASI PGGFTLNHTT ASANTTTGLG
801: EALSLQYKEG SHYMPLQQNE NPAMWVQGAG SRTMSALPAN TFYNYQGHNQ QSGFRQNLQA SPLGALGYPN LYLSQGGPSR EHQQSPSDGN LNGSQATQSQ
901: PANQIWQHGY
Best Arabidopsis Sequence Match ( AT1G29370.1 )
(BLAST)
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.