Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G403900.1 | Wheat | nucleus | 87.86 | 95.96 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 87.86 | 95.63 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 88.07 | 95.53 |
| Os05t0566900-01 | Rice | extracellular | 67.9 | 75.47 |
| KXG22544 | Sorghum | nucleus | 60.3 | 66.71 |
| Zm00001d009591_P006 | Maize | nucleus | 56.92 | 62.89 |
| Zm00001d039041_P007 | Maize | nucleus | 58.71 | 61.64 |
| KRH38470 | Soybean | endoplasmic reticulum | 4.96 | 59.49 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 13.83 | 58.48 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 52.69 | 57.36 |
| CDY61561 | Canola | cytosol | 3.7 | 53.03 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 39.07 | 44.31 |
| Solyc09g018250.2.1 | Tomato | plastid | 4.86 | 43.4 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 38.86 | 43.35 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 37.91 | 40.89 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 38.86 | 40.44 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 36.33 | 39.49 |
| PGSC0003DMT400007972 | Potato | nucleus | 34.74 | 39.35 |
| Solyc02g071180.2.1 | Tomato | nucleus | 34.53 | 39.26 |
| KRH59101 | Soybean | nucleus | 33.37 | 37.4 |
| KRH42968 | Soybean | nucleus | 32.84 | 37.16 |
| Solyc03g005750.2.1 | Tomato | nucleus | 33.05 | 37.13 |
| CDY48333 | Canola | nucleus | 32.21 | 37.06 |
| CDY15632 | Canola | nucleus | 30.41 | 36.64 |
| Bra030134.1-P | Field mustard | nucleus | 30.2 | 36.57 |
| CDY43334 | Canola | nucleus | 31.68 | 36.5 |
| AT1G29370.1 | Thale cress | nucleus | 32.0 | 36.46 |
| KRH36716 | Soybean | nucleus | 32.1 | 36.28 |
| CDX90188 | Canola | nucleus | 31.36 | 36.13 |
| Bra010832.1-P | Field mustard | nucleus | 31.36 | 36.13 |
| AT1G29350.1 | Thale cress | nucleus | 31.68 | 36.1 |
| KRH11725 | Soybean | nucleus | 31.47 | 35.48 |
| Bra021900.1-P | Field mustard | nucleus | 30.73 | 35.44 |
| CDY43685 | Canola | nucleus | 31.05 | 35.42 |
| CDX94662 | Canola | nucleus | 29.99 | 35.28 |
| Bra032310.1-P | Field mustard | nucleus | 32.0 | 35.27 |
| CDX99817 | Canola | nucleus | 22.81 | 34.84 |
| Bra022970.1-P | Field mustard | nucleus | 29.36 | 34.36 |
| CDX84653 | Canola | nucleus | 29.25 | 34.07 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 7.6 | 33.96 |
| CDY61562 | Canola | nucleus | 27.14 | 33.73 |
| CDX78828 | Canola | nucleus | 24.18 | 32.81 |
| CDY61669 | Canola | nucleus | 25.55 | 32.7 |
| Bra013287.1-P | Field mustard | nucleus | 26.4 | 32.05 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 28.51 | 31.32 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 22.07 | 31.19 |
| AT4G18150.1 | Thale cress | nucleus | 23.86 | 29.82 |
| CDY08888 | Canola | nucleus | 14.15 | 23.22 |
| CDX76544 | Canola | nucleus | 13.83 | 23.02 |
| Bra021022.1-P | Field mustard | nucleus | 14.57 | 22.22 |
| CDY11787 | Canola | nucleus | 16.37 | 21.03 |
| AT5G46380.2 | Thale cress | nucleus | 14.68 | 21.0 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 10.77 | 19.1 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 17.11 | 18.18 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 14.26 | 15.66 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G089280.1 | EnsemblPlantsGene:HORVU1Hr1G089280 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| UniParc:UPI000B479329 | UniProt:A0A287GN16 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:543388397..543396948
Molecular Weight (calculated)
101216.0 Da
IEP (calculated)
6.483
GRAVY (calculated)
-0.754
Length
947 amino acids
Sequence
(BLAST)
(BLAST)
001: RGRKGFGTQA AVASRCVAFR GRERERERET HTQSRLKPAA RSRNRSLPPP PPRLASPGPE GFAGRRPRRR RRGIPSARMS GGGAGGGGGG GKGAGPVPQA
101: SKKLVQSLKE IVNRPEAEIY AALRECAMDP DEAVSRLLSQ DTFQEVKSKR DKKKEVKETP EPRSRAANNA TSRGVRGGPD RGGRNNSAYN SSIDNMTSRS
201: SVSGSGMPST NSTQKQTVPS SSVNKNLVAD APSVPPQTSS GFQHGWSGTP GQLSMADIVK MGGRPQAQGK PSTKPVVTAD KGYAGQYPSL PTTVNQITKQ
301: SVSTVAPTEL DQGLPSAQDS VLVKDHSHTA ADNKQKYDND WAPQDDPPVG NQSSLPETSG DPSLYDAPLH PSSLVADAVY LHENSYLDDN ISAAMRSGNA
401: SERHLDHYGG SSEYSDGLLQ NSSTYLAQTH PHIEDQAEES NADVSAAANF QGLSLHDEEL AATKFAEDNP AVIIPDHLQV ANTGCAGLSF GSFGSGAFSG
501: LLPPPKSTEN NVELPIVEES EPIDHTDTRD QDFYEIPANS PPNENLEEIM GANTENLDVP SVQQPDVLRQ EILDDPSGVQ YNLPSVSSHT YANPAQPNAM
601: DAMQGSNQAH TLSHLSSLLQ SNTLQQHNLL GSNMAPLRDL DFGLSPLLAA QAQSMGARYN SAAPTTTGMQ EPMKPGVFSN TQSTQNLPST SIHMAPSLPQ
701: QLVHPYSQPT LPIAPFANMI GANMIGYNPY LAQNYPAYLP STAFQQAYSS NGQFHQSAAA VPGAGMKYSM PQYKNNMSAA NLQQQQQPSS VISGYAGFGS
801: SSNLPGNFAL NQNAAPASAN LGFDEALSAQ YKEANQYMAL QQQGDNSAMW LHGAGSRTAS ALPPTQFYGY QGQSQQQGAF RQAQQPQQPS QYGGHGYPAF
901: YHNQGGLAQE HHPQNPADGT LNGYQAAAQQ QQQQQPSHQS WQQHTSY
101: SKKLVQSLKE IVNRPEAEIY AALRECAMDP DEAVSRLLSQ DTFQEVKSKR DKKKEVKETP EPRSRAANNA TSRGVRGGPD RGGRNNSAYN SSIDNMTSRS
201: SVSGSGMPST NSTQKQTVPS SSVNKNLVAD APSVPPQTSS GFQHGWSGTP GQLSMADIVK MGGRPQAQGK PSTKPVVTAD KGYAGQYPSL PTTVNQITKQ
301: SVSTVAPTEL DQGLPSAQDS VLVKDHSHTA ADNKQKYDND WAPQDDPPVG NQSSLPETSG DPSLYDAPLH PSSLVADAVY LHENSYLDDN ISAAMRSGNA
401: SERHLDHYGG SSEYSDGLLQ NSSTYLAQTH PHIEDQAEES NADVSAAANF QGLSLHDEEL AATKFAEDNP AVIIPDHLQV ANTGCAGLSF GSFGSGAFSG
501: LLPPPKSTEN NVELPIVEES EPIDHTDTRD QDFYEIPANS PPNENLEEIM GANTENLDVP SVQQPDVLRQ EILDDPSGVQ YNLPSVSSHT YANPAQPNAM
601: DAMQGSNQAH TLSHLSSLLQ SNTLQQHNLL GSNMAPLRDL DFGLSPLLAA QAQSMGARYN SAAPTTTGMQ EPMKPGVFSN TQSTQNLPST SIHMAPSLPQ
701: QLVHPYSQPT LPIAPFANMI GANMIGYNPY LAQNYPAYLP STAFQQAYSS NGQFHQSAAA VPGAGMKYSM PQYKNNMSAA NLQQQQQPSS VISGYAGFGS
801: SSNLPGNFAL NQNAAPASAN LGFDEALSAQ YKEANQYMAL QQQGDNSAMW LHGAGSRTAS ALPPTQFYGY QGQSQQQGAF RQAQQPQQPS QYGGHGYPAF
901: YHNQGGLAQE HHPQNPADGT LNGYQAAAQQ QQQQQPSHQS WQQHTSY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.