Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
26194822
|
msms PMID:
26194822
doi
Department of Industrial Plant Science and Technology, College of Agricultural, Life and Environmental Sciences, Chungbuk National University, Cheongju 361-763, Korea., Department of Life Science, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea., Department of Plant Biology, University of California, Davis, CA 95616, USA., Division of Applied Life Science (BK21plus), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G403900.1 | Wheat | nucleus | 75.12 | 73.82 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 75.23 | 73.68 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 75.35 | 73.54 |
| KXG22544 | Sorghum | nucleus | 69.13 | 68.81 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 75.47 | 67.9 |
| Zm00001d009591_P006 | Maize | nucleus | 65.73 | 65.34 |
| Zm00001d039041_P007 | Maize | nucleus | 67.14 | 63.41 |
| Os01t0663800-01 | Rice | plasma membrane | 63.03 | 63.1 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.63 | 60.76 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 15.85 | 60.27 |
| CDY61561 | Canola | cytosol | 4.23 | 54.55 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 44.72 | 45.63 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 44.6 | 44.76 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 42.72 | 41.46 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 43.43 | 40.66 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.05 | 40.57 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 40.85 | 39.95 |
| PGSC0003DMT400007972 | Potato | nucleus | 38.73 | 39.47 |
| Solyc02g071180.2.1 | Tomato | nucleus | 38.5 | 39.38 |
| KRH42968 | Soybean | nucleus | 38.38 | 39.07 |
| KRH59101 | Soybean | nucleus | 38.73 | 39.05 |
| KRH36716 | Soybean | nucleus | 36.97 | 37.59 |
| Solyc03g005750.2.1 | Tomato | nucleus | 36.38 | 36.77 |
| KRH11725 | Soybean | nucleus | 36.15 | 36.67 |
| Os09t0261400-01 | Rice | plasma membrane | 3.4 | 36.25 |
| Bra030134.1-P | Field mustard | nucleus | 33.22 | 36.19 |
| Bra021900.1-P | Field mustard | nucleus | 34.86 | 36.18 |
| CDY43334 | Canola | nucleus | 34.86 | 36.13 |
| CDY48333 | Canola | nucleus | 34.86 | 36.09 |
| Os05t0581800-01 | Rice | nucleus | 35.92 | 35.92 |
| AT1G29370.1 | Thale cress | nucleus | 34.98 | 35.86 |
| CDX90188 | Canola | nucleus | 34.51 | 35.77 |
| CDY43685 | Canola | nucleus | 34.74 | 35.66 |
| Bra010832.1-P | Field mustard | nucleus | 34.39 | 35.64 |
| CDY15632 | Canola | nucleus | 32.86 | 35.62 |
| AT1G29350.1 | Thale cress | nucleus | 34.74 | 35.62 |
| CDX94662 | Canola | nucleus | 33.45 | 35.4 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.8 | 35.38 |
| Bra022970.1-P | Field mustard | nucleus | 32.86 | 34.61 |
| CDX84653 | Canola | nucleus | 32.75 | 34.32 |
| Bra032310.1-P | Field mustard | nucleus | 34.39 | 34.11 |
| CDY61669 | Canola | nucleus | 29.58 | 34.05 |
| CDX78828 | Canola | nucleus | 27.82 | 33.95 |
| CDX99817 | Canola | nucleus | 24.53 | 33.71 |
| Bra013287.1-P | Field mustard | nucleus | 30.75 | 33.59 |
| CDY61562 | Canola | nucleus | 29.69 | 33.2 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 24.77 | 31.49 |
| AT4G18150.1 | Thale cress | nucleus | 27.23 | 30.61 |
| CDY08888 | Canola | nucleus | 15.73 | 23.22 |
| CDX76544 | Canola | nucleus | 15.26 | 22.85 |
| AT5G46380.2 | Thale cress | nucleus | 16.9 | 21.75 |
| Bra021022.1-P | Field mustard | nucleus | 15.73 | 21.58 |
| CDY11787 | Canola | nucleus | 17.02 | 19.67 |
| Os06t0206100-01 | Rice | nucleus | 16.08 | 16.04 |
| Os03t0411000-01 | Rice | nucleus | 11.85 | 13.1 |
Protein Annotations
| EMBL:AK066026 | EMBL:AK120605 | EnsemblPlants:Os05t0566900-01 | EnsemblPlantsGene:Os05g0566900 | EntrezGene:4339638 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 |
| PFAM:PF06972 | ProteinID:AAU10662.1 | ProteinID:BAF18261.1 | ProteinID:BAS95378.1 | ProteinID:EEE64717.1 | RefSeq:XP_015639815.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI000042ABAB | UniProt:Q688W7 | MapMan:35.2 | : |
Description
Similar to TA9 protein (Fragment). (Os05t0566900-01);Hypothetical conserved gene. (Os05t0566900-02)
Coordinates
chr5:+:28220147..28228800
Molecular Weight (calculated)
90134.9 Da
IEP (calculated)
5.152
GRAVY (calculated)
-0.638
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGGGAGGGG GGGKGGAAAG PVPAASRKLV QSLKEIVNRP EAEIYAALRD CGMDPDEAVS RLLSQDTFQE VKSKRDKKKE VKEIPEPRSR AASNAASRGV
101: RGGADRGGRN SSFHSSSIDN VASRSISGPG MTSTNSTQKQ TIPSSLVNKS VVADGPSVPA QSSSGFQHGW SGTPGQLSMA DIVKMGRPQV KQSSSKPAVT
201: ADKGYTGQYP SLPSTVNQNL KQSASTVSPT NPDQGLHSAQ DSIHPKDHNH SAAVNKQAYD NDWLPQDEPP PGNQSALPET SGDQSLYESS LQSSTLVAGV
301: INPHENSHLD ENRSAAFSSE RHLEHHGGDS EYDDGLLQES STYLPQKNSH AEDEVEGSNS DVALATENFQ GLSLHNEELV PTKLAEDNPA VIIPDHLQVT
401: GSDCVTLSFG SFESGAFSGL LPVPSRSADD NNVELPVIEE SVPLDQIDSR DQDYYDSAAV NSSGNENLDT IIGTNMENID VPSVSQPDVL RQEVLDHSGL
501: QYNLPSDSSA AYANTTQPST MESSQGNNQA HTLSHLSNLL QANSLHNSLL GSNIAPLRDL DFSLSPLLAA QSMTKYNSAA PTTTGPAISM QETLKPGVFS
601: NAQSTQNLPS TSIATGPPLP QQLVHPYSQP TVPLAPFANM IGYPYLAQNY PAAYLPSAAF QQAYSSNGPF HQSAAAAVPG AMKYNMNVPQ FKNNLSATSL
701: QQQPSSVISG YGGFGSSSNL PGNFTLNQNA ASASTNLGFD EALSTPYKDP SQYMALQQGD NSAMWLHGAG SRATSALPPS HFYGFQGQSQ QGGFRQAQQP
801: QQHSQFGGHG YPAFYHSQSQ EHHQNPAEGG LNGFQNAQSQ PSHQGWQQHT GY
101: RGGADRGGRN SSFHSSSIDN VASRSISGPG MTSTNSTQKQ TIPSSLVNKS VVADGPSVPA QSSSGFQHGW SGTPGQLSMA DIVKMGRPQV KQSSSKPAVT
201: ADKGYTGQYP SLPSTVNQNL KQSASTVSPT NPDQGLHSAQ DSIHPKDHNH SAAVNKQAYD NDWLPQDEPP PGNQSALPET SGDQSLYESS LQSSTLVAGV
301: INPHENSHLD ENRSAAFSSE RHLEHHGGDS EYDDGLLQES STYLPQKNSH AEDEVEGSNS DVALATENFQ GLSLHNEELV PTKLAEDNPA VIIPDHLQVT
401: GSDCVTLSFG SFESGAFSGL LPVPSRSADD NNVELPVIEE SVPLDQIDSR DQDYYDSAAV NSSGNENLDT IIGTNMENID VPSVSQPDVL RQEVLDHSGL
501: QYNLPSDSSA AYANTTQPST MESSQGNNQA HTLSHLSNLL QANSLHNSLL GSNIAPLRDL DFSLSPLLAA QSMTKYNSAA PTTTGPAISM QETLKPGVFS
601: NAQSTQNLPS TSIATGPPLP QQLVHPYSQP TVPLAPFANM IGYPYLAQNY PAAYLPSAAF QQAYSSNGPF HQSAAAAVPG AMKYNMNVPQ FKNNLSATSL
701: QQQPSSVISG YGGFGSSSNL PGNFTLNQNA ASASTNLGFD EALSTPYKDP SQYMALQQGD NSAMWLHGAG SRATSALPPS HFYGFQGQSQ QGGFRQAQQP
801: QQHSQFGGHG YPAFYHSQSQ EHHQNPAEGG LNGFQNAQSQ PSHQGWQQHT GY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.