Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g018250.2.1 | Tomato | plastid | 8.5 | 69.81 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.74 | 63.29 |
| KRH42968 | Soybean | nucleus | 59.82 | 62.25 |
| CDY61561 | Canola | cytosol | 4.71 | 62.12 |
| KRH59101 | Soybean | nucleus | 60.05 | 61.89 |
| Solyc02g071180.2.1 | Tomato | nucleus | 57.41 | 60.02 |
| PGSC0003DMT400007972 | Potato | nucleus | 57.52 | 59.93 |
| KRH36716 | Soybean | nucleus | 56.49 | 58.71 |
| KRH11725 | Soybean | nucleus | 56.49 | 58.57 |
| Solyc03g005750.2.1 | Tomato | nucleus | 55.8 | 57.65 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 13.43 | 55.19 |
| Zm00001d035703_P001 | Maize | nucleus | 16.07 | 51.85 |
| AT1G29370.1 | Thale cress | nucleus | 47.99 | 50.3 |
| AT1G29350.1 | Thale cress | nucleus | 47.76 | 50.06 |
| CDY15632 | Canola | nucleus | 45.01 | 49.87 |
| Bra030134.1-P | Field mustard | nucleus | 44.78 | 49.87 |
| CDY48333 | Canola | nucleus | 46.96 | 49.7 |
| CDX94662 | Canola | nucleus | 45.92 | 49.69 |
| CDY43334 | Canola | nucleus | 46.5 | 49.27 |
| Zm00001d017358_P001 | Maize | nucleus | 6.2 | 49.09 |
| CDX90188 | Canola | nucleus | 46.15 | 48.91 |
| Bra010832.1-P | Field mustard | nucleus | 45.81 | 48.54 |
| Bra021900.1-P | Field mustard | nucleus | 45.69 | 48.48 |
| Bra022970.1-P | Field mustard | nucleus | 44.66 | 48.08 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 46.04 | 48.02 |
| CDY43685 | Canola | nucleus | 45.24 | 47.47 |
| CDX99817 | Canola | nucleus | 33.75 | 47.42 |
| CDX84653 | Canola | nucleus | 44.2 | 47.36 |
| Bra032310.1-P | Field mustard | nucleus | 46.61 | 47.26 |
| CDY61562 | Canola | nucleus | 39.49 | 45.14 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 43.97 | 45.11 |
| CDY61669 | Canola | nucleus | 38.12 | 44.86 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 44.09 | 43.74 |
| Bra013287.1-P | Field mustard | nucleus | 38.69 | 43.21 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 45.01 | 43.08 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 32.72 | 42.54 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 7.46 | 42.48 |
| CDX78828 | Canola | nucleus | 33.87 | 42.26 |
| KXG33052 | Sorghum | nucleus | 39.15 | 41.43 |
| Os01t0663800-01 | Rice | plasma membrane | 40.18 | 41.13 |
| Os05t0566900-01 | Rice | extracellular | 39.95 | 40.85 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 39.61 | 40.83 |
| AT4G18150.1 | Thale cress | nucleus | 35.48 | 40.77 |
| Zm00001d043962_P001 | Maize | nucleus | 39.15 | 40.5 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 38.81 | 40.09 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 37.2 | 39.8 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 39.72 | 39.77 |
| Zm00001d011517_P002 | Maize | nucleus | 38.35 | 39.76 |
| KXG22544 | Sorghum | nucleus | 38.81 | 39.49 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 39.27 | 39.18 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 38.81 | 38.98 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 38.92 | 38.97 |
| Zm00001d009591_P006 | Maize | nucleus | 36.74 | 37.34 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 39.49 | 36.33 |
| Zm00001d039041_P007 | Maize | nucleus | 37.43 | 36.14 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 35.02 | 36.09 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 34.9 | 35.68 |
| Zm00001d039138_P012 | Maize | nucleus | 33.52 | 35.22 |
| KXG22612 | Sorghum | nucleus | 33.41 | 34.98 |
| Zm00001d004950_P001 | Maize | nucleus | 12.4 | 34.84 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 8.73 | 33.93 |
| Os05t0581800-01 | Rice | nucleus | 32.95 | 33.69 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 32.03 | 32.71 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 32.03 | 32.37 |
| Zm00001d009683_P004 | Maize | nucleus | 31.34 | 32.08 |
| CDY11787 | Canola | nucleus | 25.49 | 30.12 |
| CDY08888 | Canola | nucleus | 19.4 | 29.29 |
| CDX76544 | Canola | nucleus | 18.48 | 28.3 |
| Bra021022.1-P | Field mustard | nucleus | 19.06 | 26.73 |
| AT5G46380.2 | Thale cress | nucleus | 19.75 | 25.98 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 24.0 | 23.33 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 6.2 | 21.09 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 18.94 | 20.99 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 19.4 | 20.89 |
Protein Annotations
| EntrezGene:100245196 | wikigene:100245196 | MapMan:35.2 | ProteinID:CCB55758 | ProteinID:CCB55758.1 | UniProt:F6HMG9 |
| EMBL:FN595992 | InterPro:GIP1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EntrezGene:LOC100245196 |
| wikigene:LOC100245196 | PFAM:PF06972 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | SUPFAM:SSF46934 | InterPro:UBA-like_sf |
| UniParc:UPI0002108E0D | ArrayExpress:VIT_10s0003g02740 | EnsemblPlantsGene:VIT_10s0003g02740 | EnsemblPlants:VIT_10s0003g02740.t01 | RefSeq:XP_002271969 | RefSeq:XP_002271969.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:4807188..4823344
Molecular Weight (calculated)
93155.1 Da
IEP (calculated)
5.857
GRAVY (calculated)
-0.691
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGGGGGGG VSSVNGKGSG GISTIPAASR KMVQSLREVV NCSEQEIYAM LKECNMDPND AVHRLLSLDP FHEVKSKKDK RKESKDTTES RSRSVNSTST
101: RGSRGGTDRF AGRSSSNQFS STDSGTSHGK SAYKKENGTN AYTTYPAVGV AGNSMNWRPP TTSETVATEK ILTIGTSDGI TSSSQPSSGF QSAWLGVPGH
201: VSMADIVKKG RPHGKASATP NTSYPNVTNH QVLAPSSTAL HHDLHSYDHV SKVSDMNPEP GIAAKQNVPP NDEWPLVEQL PSASVSSLLE PSADSQPFTD
301: QSNLPLDSNQ HINPQLDEAQ DEDDSSDENL NEDHVISASV SSRKIQEDNS GGASLFDNDL YENMGSYQPH RHAFEHHEAE DVGVPVSSVA TNMQELTLQE
401: DPRPKPEEDD HSVIIPNHLQ VQHADFSHLS FGSFRSGISS SFSGPFASRS VKNSLEDAST VADTPVGHSE TRNPDYYEDE HLRTTSDGNM AHRTAAIAGS
501: YDSPSASQPE ALKQEASEAA QGNQYNFPSS ASGYTFETSQ QLNPAFPHSQ TSSQMQNLAP FSSVMQAYTN SLPSNLLAST VPPARESDLP YSPFPITQSM
601: STKYSNAVSS ISGSTISVTE ALKTGSFSTP QPTPQTLPST SVATGPALPQ HLPPVHPYSQ PGLPLGHFAN MIGYPFLPQS YTYMPSAYQQ AFAGNSTYHQ
701: SLAAVLPQYK NSVSVSSLPQ SAAIASGYGA FGSSTSIPGN FSLNPPTAAA GTTIGYDDVI NSQYKDGNHL ISLQQQNENS AMWVHGPGSR TMSAVPANTY
801: YSFQGQNQQP GGFRQGQQPS QHFGALGYPN FYHSQAGISL EHQQQNPRDG SLSGSQGQAS KQSQQIWQNN Y
101: RGSRGGTDRF AGRSSSNQFS STDSGTSHGK SAYKKENGTN AYTTYPAVGV AGNSMNWRPP TTSETVATEK ILTIGTSDGI TSSSQPSSGF QSAWLGVPGH
201: VSMADIVKKG RPHGKASATP NTSYPNVTNH QVLAPSSTAL HHDLHSYDHV SKVSDMNPEP GIAAKQNVPP NDEWPLVEQL PSASVSSLLE PSADSQPFTD
301: QSNLPLDSNQ HINPQLDEAQ DEDDSSDENL NEDHVISASV SSRKIQEDNS GGASLFDNDL YENMGSYQPH RHAFEHHEAE DVGVPVSSVA TNMQELTLQE
401: DPRPKPEEDD HSVIIPNHLQ VQHADFSHLS FGSFRSGISS SFSGPFASRS VKNSLEDAST VADTPVGHSE TRNPDYYEDE HLRTTSDGNM AHRTAAIAGS
501: YDSPSASQPE ALKQEASEAA QGNQYNFPSS ASGYTFETSQ QLNPAFPHSQ TSSQMQNLAP FSSVMQAYTN SLPSNLLAST VPPARESDLP YSPFPITQSM
601: STKYSNAVSS ISGSTISVTE ALKTGSFSTP QPTPQTLPST SVATGPALPQ HLPPVHPYSQ PGLPLGHFAN MIGYPFLPQS YTYMPSAYQQ AFAGNSTYHQ
701: SLAAVLPQYK NSVSVSSLPQ SAAIASGYGA FGSSTSIPGN FSLNPPTAAA GTTIGYDDVI NSQYKDGNHL ISLQQQNENS AMWVHGPGSR TMSAVPANTY
801: YSFQGQNQQP GGFRQGQQPS QHFGALGYPN FYHSQAGISL EHQQQNPRDG SLSGSQGQAS KQSQQIWQNN Y
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.