Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G241400.3 | Wheat | nucleus | 93.37 | 96.93 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 96.33 | 96.56 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 93.14 | 90.46 |
| KXG33052 | Sorghum | nucleus | 69.7 | 71.57 |
| Os01t0663800-01 | Rice | plasma membrane | 71.48 | 70.98 |
| Zm00001d035703_P001 | Maize | nucleus | 22.49 | 70.37 |
| Zm00001d043962_P001 | Maize | nucleus | 69.59 | 69.83 |
| Zm00001d011517_P002 | Maize | nucleus | 68.17 | 68.57 |
| Zm00001d017358_P001 | Maize | nucleus | 8.76 | 67.27 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 60.47 | 58.53 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.21 | 55.7 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 9.59 | 52.94 |
| Zm00001d004950_P001 | Maize | nucleus | 17.99 | 49.03 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.8 | 46.23 |
| CDY61561 | Canola | cytosol | 3.55 | 45.45 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 43.91 | 44.43 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 42.13 | 41.93 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 41.42 | 39.86 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 42.84 | 39.78 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 40.83 | 39.61 |
| PGSC0003DMT400007972 | Potato | nucleus | 38.11 | 38.52 |
| Solyc02g071180.2.1 | Tomato | nucleus | 37.51 | 38.06 |
| KRH59101 | Soybean | nucleus | 37.04 | 37.04 |
| KRH42968 | Soybean | nucleus | 36.69 | 37.04 |
| KRH36716 | Soybean | nucleus | 36.21 | 36.52 |
| Solyc03g005750.2.1 | Tomato | nucleus | 36.33 | 36.42 |
| KRH11725 | Soybean | nucleus | 35.62 | 35.83 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.88 | 35.38 |
| AT1G29370.1 | Thale cress | nucleus | 33.14 | 33.69 |
| CDY48333 | Canola | nucleus | 32.78 | 33.66 |
| Bra030134.1-P | Field mustard | nucleus | 31.12 | 33.63 |
| CDY43334 | Canola | nucleus | 32.54 | 33.45 |
| AT1G29350.1 | Thale cress | nucleus | 32.78 | 33.33 |
| CDX90188 | Canola | nucleus | 32.43 | 33.33 |
| Bra021900.1-P | Field mustard | nucleus | 32.19 | 33.13 |
| CDY15632 | Canola | nucleus | 30.65 | 32.95 |
| CDX94662 | Canola | nucleus | 31.36 | 32.92 |
| CDY43685 | Canola | nucleus | 32.31 | 32.89 |
| Bra010832.1-P | Field mustard | nucleus | 31.95 | 32.85 |
| CDY61669 | Canola | nucleus | 28.64 | 32.7 |
| CDX99817 | Canola | nucleus | 23.79 | 32.42 |
| Bra022970.1-P | Field mustard | nucleus | 30.77 | 32.14 |
| Bra032310.1-P | Field mustard | nucleus | 32.54 | 32.01 |
| Bra013287.1-P | Field mustard | nucleus | 29.47 | 31.92 |
| CDX78828 | Canola | nucleus | 26.27 | 31.81 |
| CDX84653 | Canola | nucleus | 30.53 | 31.73 |
| CDY61562 | Canola | nucleus | 27.81 | 30.84 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 30.89 | 30.6 |
| AT4G18150.1 | Thale cress | nucleus | 26.27 | 29.29 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 22.01 | 27.76 |
| CDY08888 | Canola | nucleus | 15.86 | 23.22 |
| CDX76544 | Canola | nucleus | 15.5 | 23.02 |
| Bra021022.1-P | Field mustard | nucleus | 16.21 | 22.06 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 19.41 | 19.9 |
| CDY11787 | Canola | nucleus | 17.28 | 19.81 |
| AT5G46380.2 | Thale cress | nucleus | 15.5 | 19.79 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 16.21 | 15.77 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G269500.1 | EnsemblPlantsGene:TraesCS3B01G269500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:434052106..434065260
Molecular Weight (calculated)
89895.8 Da
IEP (calculated)
5.005
GRAVY (calculated)
-0.628
Length
845 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGGGGRG PAAGPVPASA RKLVQGLKEI VSRSDSEIYA ALRDCGMDPD EAVSRLLSQD TFQEVKNKRD KKKEVNKGTP EPRSRGANNS NSRAARVGTD
101: RTNRSSSVQS VSGGVDNVAS RSSILGPGVP STNSTQKPTV PSSFANKDVV PDGLCGASQS SSGFQQNWCG VPGQMSMADI VKMGRPQGRS SSKSMATADK
201: AFAGQNPSLS NETNHNTKQS ASRVAPTTFD QGFPALPDPI PQVINSNHTS ADSHQTHESV WFPQDGPPSQ SQFTAPEPSG GPLSFVASLE SSVLVADAVN
301: LHEKSHTEDN TSIVKQTAIP SERHLEVLHD QVRFGDELLQ NSSTYQSQMH SFADEVEVSN VDVDSAATNF QHLSLQNEDL AAANSADDNP AVIIPDHLQL
401: ENTDCAHLSF GSFESGAFSG LLPSKVPKYS VEEVPNSDET PAVDQIDVRN QDYYDNGALQ SSANEDVETR IGTNIENTDV PSVSQPDILM QGALDVSGLQ
501: YNPPSVSDHV YPNTTQPSIM ESQQGNAQAQ HLSHFSSLLA QQANTLQSNF LGSNLTQHRD FDFSPFLSAQ SAMKYNPAVP TTSYPISMQE NLNQGGFSNT
601: QSTQNPPSTS IPSGLPQPQQ LSLHPYSQPT LPLGPFASLV GYPYLPQNYY VPPTAFQQAY SSNGPFHQSG GGGAAVPGSA MKYSMPQYKS GLPVMSPPQH
701: SSAVSGYGGF GSSSNIPNFG QNQSASPATT MGIDEALSSQ LKEANHYMAL QQSDNSAMWL HGAAGSRAVS AVPPGNFYGF QGQSAQGGFR EVQQPSQYGG
801: LGYPSFYQSQ NGMQQEHPQN PAEGSLNSSQ TAPSQPSHQM WQHSY
101: RTNRSSSVQS VSGGVDNVAS RSSILGPGVP STNSTQKPTV PSSFANKDVV PDGLCGASQS SSGFQQNWCG VPGQMSMADI VKMGRPQGRS SSKSMATADK
201: AFAGQNPSLS NETNHNTKQS ASRVAPTTFD QGFPALPDPI PQVINSNHTS ADSHQTHESV WFPQDGPPSQ SQFTAPEPSG GPLSFVASLE SSVLVADAVN
301: LHEKSHTEDN TSIVKQTAIP SERHLEVLHD QVRFGDELLQ NSSTYQSQMH SFADEVEVSN VDVDSAATNF QHLSLQNEDL AAANSADDNP AVIIPDHLQL
401: ENTDCAHLSF GSFESGAFSG LLPSKVPKYS VEEVPNSDET PAVDQIDVRN QDYYDNGALQ SSANEDVETR IGTNIENTDV PSVSQPDILM QGALDVSGLQ
501: YNPPSVSDHV YPNTTQPSIM ESQQGNAQAQ HLSHFSSLLA QQANTLQSNF LGSNLTQHRD FDFSPFLSAQ SAMKYNPAVP TTSYPISMQE NLNQGGFSNT
601: QSTQNPPSTS IPSGLPQPQQ LSLHPYSQPT LPLGPFASLV GYPYLPQNYY VPPTAFQQAY SSNGPFHQSG GGGAAVPGSA MKYSMPQYKS GLPVMSPPQH
701: SSAVSGYGGF GSSSNIPNFG QNQSASPATT MGIDEALSSQ LKEANHYMAL QQSDNSAMWL HGAAGSRAVS AVPPGNFYGF QGQSAQGGFR EVQQPSQYGG
801: LGYPSFYQSQ NGMQQEHPQN PAEGSLNSSQ TAPSQPSHQM WQHSY
001: MKTYILVWSC MMSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK
101: PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS
201: FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL
301: ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ
401: SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA
501: ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS
601: GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS
201: FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL
301: ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ
401: SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA
501: ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS
601: GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.