Factsheet for Zm00001d043962_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035703_P001	Maize	nucleus	30.4	94.81
Zm00001d017358_P001	Maize	nucleus	12.23	93.64
KXG33052	Sorghum	nucleus	90.26	92.35
Zm00001d011517_P002	Maize	nucleus	88.6	88.81
Zm00001d035814_P001	Maize	cytosol, mitochondrion, nucleus, plastid, vacuole	13.3	73.2
TraesCS3B01G269500.1	Wheat	nucleus	69.83	69.59
Os01t0663800-01	Rice	plasma membrane	70.19	69.45
TraesCS3A01G241400.3	Wheat	nucleus	67.1	69.41
TraesCS3D01G241600.2	Wheat	nucleus	69.0	68.92
HORVU3Hr1G060080.3	Barley	cytosol, nucleus, vacuole	69.0	66.78
Zm00001d004950_P001	Maize	nucleus	24.47	66.45
KRH38470	Soybean	endoplasmic reticulum	5.11	54.43
Zm00001d009591_P006	Maize	nucleus	54.87	53.91
Zm00001d039041_P007	Maize	nucleus	55.46	51.77
CDY61561	Canola	cytosol	4.04	51.52
Zm00001d015193_P001	Maize	nucleus, plastid	12.59	47.32
Solyc09g018250.2.1	Tomato	plastid	5.82	46.23
GSMUA_Achr7P25510_001	Banana	nucleus	42.52	42.87
GSMUA_Achr4P14940_001	Banana	nucleus	42.16	41.81
VIT_10s0003g02740.t01	Wine grape	nucleus	40.5	39.15
Zm00001d050118_P001	Maize	mitochondrion	19.36	38.81
GSMUA_Achr3P31170_001	Banana	nucleus	40.38	38.72
GSMUA_Achr4P07880_001	Banana	nucleus	41.81	38.68
PGSC0003DMT400007972	Potato	nucleus	37.89	38.16
Solyc02g071180.2.1	Tomato	nucleus	37.41	37.82
Solyc03g005750.2.1	Tomato	nucleus	37.05	37.01
KRH36716	Soybean	nucleus	36.82	36.99
KRH11725	Soybean	nucleus	36.82	36.9
VIT_19s0014g03260.t01	Wine grape	nucleus	9.26	36.79
KRH59101	Soybean	nucleus	36.34	36.21
KRH42968	Soybean	nucleus	35.75	35.96
Bra030134.1-P	Field mustard	nucleus	31.71	34.14
AT1G29370.1	Thale cress	nucleus	33.49	33.94
CDY15632	Canola	nucleus	31.59	33.84
AT1G29350.1	Thale cress	nucleus	33.25	33.69
CDY48333	Canola	nucleus	32.9	33.66
Zm00001d039138_P012	Maize	nucleus	33.14	33.66
CDX90188	Canola	nucleus	32.78	33.58
Bra021900.1-P	Field mustard	nucleus	32.66	33.5
CDY43334	Canola	nucleus	32.66	33.45
CDX94662	Canola	nucleus	31.95	33.42
CDY43685	Canola	nucleus	32.9	33.37
Bra010832.1-P	Field mustard	nucleus	32.42	33.21
Bra032310.1-P	Field mustard	nucleus	33.02	32.36
Bra022970.1-P	Field mustard	nucleus	31.0	32.26
Zm00001d009683_P004	Maize	nucleus	32.54	32.2
CDX84653	Canola	nucleus	30.76	31.86
CDY61669	Canola	nucleus	27.91	31.76
CDX99817	Canola	nucleus	23.28	31.61
CDY61562	Canola	nucleus	28.27	31.23
CDX78828	Canola	nucleus	25.77	31.09
Bra013287.1-P	Field mustard	nucleus	28.62	30.9
AT4G18150.1	Thale cress	nucleus	26.01	28.89
CDY37665	Canola	cytosol, nucleus, plastid	22.21	27.91
CDY08888	Canola	nucleus	14.96	21.84
CDX76544	Canola	nucleus	14.61	21.62
AT5G46380.2	Thale cress	nucleus	16.27	20.69
Bra021022.1-P	Field mustard	nucleus	15.2	20.61
CDY11787	Canola	nucleus	17.7	20.22
Zm00001d050112_P011	Maize	nucleus	16.98	16.88
Zm00001d044979_P010	Maize	nucleus	16.75	16.55
Zm00001d037122_P009	Maize	nucleus	16.75	16.4
Zm00001d029487_P001	Maize	nucleus	11.64	13.28

Protein Annotations

EnsemblPlants:Zm00001d043962_P001	EnsemblPlants:Zm00001d043962_T001	EnsemblPlantsGene:Zm00001d043962	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GIP1	InterPro:UBA-like_sf	PANTHER:PTHR12758	PANTHER:PTHR12758:SF35	PFAM:PF06972	ProteinID:ONM39532.1
SEG:seg	SUPFAM:SSF46934	UniParc:UPI000189D571	UniProt:A0A1D6NGH1	MapMan:35.2	:

Description

GBF-interacting protein 1

Coordinates

chr3:+:214949006..214956897

Molecular Weight (calculated)

89488.3 Da

IEP (calculated)

4.815

GRAVY (calculated)

-0.631

Length

842 amino acids

Sequence
(BLAST)

001: MSSGGGGGGA RGPSGPVPAS ARKLVQGLKE IVNRPDAEIY AALRECNMDP DEAVSRLLSQ DTFQEVKSKR DRKKEVKETP EPRSRGASNS SRSSRGGVDR
101: AGRGNSVQSG SSGTDYMASR SSILGPAVAA TNAMQKPTVP SLSTNKDVVP NGSVGAQQSS SGFQHNWFGV PGQMSMADIV KMGRPQVRSS GKPMAAGDTS
201: YAGQTPSLSS SINQNSKQSA STALPTTFDQ GFPALPDPIP HTVNSSHGSA GNNHTHENDW FPQDDLPSGV QPTCIEASGD QSLFVASLDQ SMLVADASYS
301: QEISHAEENN STAVEATLSS ERHLEIVEDD NHFNDGLLQN SSAYQAQVHS YVDNEVGISN VDAESASMNF QHLSLQNEDI AATKSAEDNP AVILPDHLQA
401: ANADCAHLSF GSFESGAFSG LLSSKVPKGS LEDDEVLIPD ESRSVNRIDV RNQDYYDDDA LNSSENVDVE TRIGNMDNID GPSVSESDAL RQGAIDVPGL
501: QYDLPSVSSH AYSNTTQPST MEEPQGNTQA QPLSHFSGLL QANTLPNNLL GSNLTPLREF DFSQFLQTQS ATKYNPSVAP NNLPPISMQE TSKQGGFPNT
601: QSTQHVPSTS ISSGLPLPQQ LPVYSQPTLP LGPFTSLVGY PYLPQNYYLP SAPFQQAYSS NGPFHQSAAP AVPGAGMKYP MPQYKSSPPA STLPQPSSLS
701: GYGGFGSANN IPGNFSQNQG APAAPTTLGF DEALGTQFKH PNHYAALQQS DNSTMWLHGG AGSRTISAVP PGNFYGFQGQ SQHGGFRQAH QPSQYGGLGY
801: PSFYQSQTSL PQEHPQNPTE GSLNNPQGVP SQPSHQLWQH IY

Best Arabidopsis Sequence Match ( AT1G29370.1 )
(BLAST)

001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y

Arabidopsis Description

RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.