Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61561 | Canola | cytosol | 44.3 | 53.03 |
| KRH11725 | Soybean | nucleus | 93.67 | 8.81 |
| KRH36716 | Soybean | nucleus | 86.08 | 8.11 |
| KRH42968 | Soybean | nucleus | 75.95 | 7.17 |
| KRH59101 | Soybean | nucleus | 75.95 | 7.1 |
| CDX78828 | Canola | nucleus | 58.23 | 6.59 |
| Bra021900.1-P | Field mustard | nucleus | 68.35 | 6.58 |
| Bra022970.1-P | Field mustard | nucleus | 65.82 | 6.43 |
| CDX84653 | Canola | nucleus | 65.82 | 6.4 |
| CDY43685 | Canola | nucleus | 67.09 | 6.39 |
| CDY61669 | Canola | nucleus | 59.49 | 6.35 |
| CDY43334 | Canola | nucleus | 65.82 | 6.33 |
| Solyc03g005750.2.1 | Tomato | nucleus | 67.09 | 6.29 |
| CDY08888 | Canola | nucleus | 45.57 | 6.24 |
| Bra030134.1-P | Field mustard | nucleus | 60.76 | 6.14 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 65.82 | 6.12 |
| CDY15632 | Canola | nucleus | 60.76 | 6.11 |
| CDY48333 | Canola | nucleus | 63.29 | 6.08 |
| AT4G18150.1 | Thale cress | nucleus | 58.23 | 6.07 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 63.29 | 5.99 |
| CDX76544 | Canola | nucleus | 43.04 | 5.98 |
| CDX90188 | Canola | nucleus | 62.03 | 5.96 |
| Bra010832.1-P | Field mustard | nucleus | 62.03 | 5.96 |
| Bra013287.1-P | Field mustard | nucleus | 58.23 | 5.9 |
| CDX94662 | Canola | nucleus | 59.49 | 5.84 |
| Bra032310.1-P | Field mustard | nucleus | 63.29 | 5.82 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 63.29 | 5.74 |
| AT1G29370.1 | Thale cress | nucleus | 59.49 | 5.66 |
| AT1G29350.1 | Thale cress | nucleus | 59.49 | 5.66 |
| Solyc02g071180.2.1 | Tomato | nucleus | 59.49 | 5.64 |
| Os01t0663800-01 | Rice | plasma membrane | 60.76 | 5.64 |
| Os05t0566900-01 | Rice | extracellular | 60.76 | 5.63 |
| PGSC0003DMT400007972 | Potato | nucleus | 59.49 | 5.62 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 62.03 | 5.61 |
| KXG33052 | Sorghum | nucleus | 58.23 | 5.59 |
| AT5G46380.2 | Thale cress | nucleus | 46.84 | 5.59 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 60.76 | 5.52 |
| KXG22544 | Sorghum | nucleus | 59.49 | 5.49 |
| Bra021022.1-P | Field mustard | nucleus | 43.04 | 5.48 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 59.49 | 5.42 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 55.7 | 5.41 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 59.49 | 5.35 |
| Zm00001d039138_P012 | Maize | nucleus | 55.7 | 5.31 |
| KXG22612 | Sorghum | nucleus | 55.7 | 5.29 |
| Zm00001d009591_P006 | Maize | nucleus | 56.96 | 5.25 |
| Zm00001d011517_P002 | Maize | nucleus | 55.7 | 5.24 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 55.7 | 5.22 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 55.7 | 5.21 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 59.49 | 5.16 |
| Zm00001d043962_P001 | Maize | nucleus | 54.43 | 5.11 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 55.7 | 5.06 |
| Zm00001d039041_P007 | Maize | nucleus | 56.96 | 4.99 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 53.16 | 4.97 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 59.49 | 4.96 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 53.16 | 4.93 |
| Zm00001d009683_P004 | Maize | nucleus | 50.63 | 4.7 |
| Os05t0581800-01 | Rice | nucleus | 50.63 | 4.69 |
| KRH73929 | Soybean | nucleus | 41.77 | 4.32 |
| KRH14203 | Soybean | nucleus | 41.77 | 4.27 |
| KRH06147 | Soybean | nucleus | 44.3 | 4.07 |
| KRH46046 | Soybean | nucleus | 41.77 | 4.07 |
| KRH47571 | Soybean | nucleus | 43.04 | 3.94 |
| KRH16977 | Soybean | nucleus | 41.77 | 3.76 |
| KRH72609 | Soybean | nucleus | 40.51 | 3.62 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.86 | 3.3 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 25.32 | 2.32 |
| CDY61562 | Canola | nucleus | 18.99 | 1.97 |
| Zm00001d004950_P001 | Maize | nucleus | 7.59 | 1.94 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 17.72 | 1.64 |
| Zm00001d035703_P001 | Maize | nucleus | 3.8 | 1.11 |
| CDY11787 | Canola | nucleus | 8.86 | 0.95 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 3.8 | 0.45 |
| KRG98923 | Soybean | nucleus | 0.0 | 0.0 |
| CDX99817 | Canola | nucleus | 0.0 | 0.0 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 0.0 | 0.0 |
| Zm00001d017358_P001 | Maize | nucleus | 0.0 | 0.0 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 0.0 | 0.0 |
| Solyc09g018250.2.1 | Tomato | plastid | 0.0 | 0.0 |
Protein Annotations
| EMBL:ACUP02005818 | EnsemblPlants:KRH38470 | EnsemblPlantsGene:GLYMA_09G137800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | ProteinID:KRH38470 |
| ProteinID:KRH38470.1 | SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0002956BA7 | UniProt:K7LDS8 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr9:-:34150287..34150791
Molecular Weight (calculated)
8668.4 Da
IEP (calculated)
10.680
GRAVY (calculated)
-0.853
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGKGGGSHN NGDGKALSAT IPVSSRKMVQ SLKEIVSNFP NHKIYATLKD CNMDPNKAVS RLLSQDPFHE VKSKREKKK
001: MGGGGGSVSN ANGGVPASSR KVIQDLKEIV ECSELEIYAM LVECDMNPDE AVNRLLSQDT FHEVKSKREK KKETKDHADS WTRNVPNRGA RSGNDSYNTS
101: RGGRNKYKSN ETGKIQGVPV NRRENGARNH LAGSSASSGL LGRLPGLLRR QPPSNSDLPS SKVKKAPTTP SDAVTLSSLP FPAYQSAWAS ANPGQRTMAE
201: IVKMGRPNLQ KNVALPRSSE AQESSSKAPL KDECPSIEKQ DVSYLSSSVL KPSAESKISS DQFSESQHLD ETLLDDIHRE TKTYPTGSPP DVDHNPLASV
301: SSRNLVDDES RDSLVCDDEN NKAERHSYEE NQDEDVSTSV ATGFQQLTIY NEEEQEALPK EEKHAVIIPN HLQVHTSECL HLMFGCFSSG IGSGQPSALN
401: DNLEEPLVAE DDSSFRHPDT NFYGEEEAEQ PRNAVTNEQV SYQIDSSYRF ENNQLFHPPS ETNPQRQNLD TYPNIMQQGY TSSLPNTLLP SGIQDGRESN
501: LHYSPFTTLY NTEISMAEAL RAASISPQNA IPSAGQQAAT LAQHLALNPY SHQPEMPLGH YGNLISYPFM AQCYNPFMLS AFQQVFPTGN HQSLVDMLMQ
601: YKTQTTAPPV PPPSAYGFGG GAVSSNNFPL NPTSAANSYE DVLSSQFNES NHLASSLQQQ NEKTTAWHQG QQANSRVVPG SGYYSYPGHQ NQQPPGFRQA
701: QQLQHQQQSS QQQQQQQHYG GHGYVSPYHS QAVMSLEHLH HQYQQQQNAR DASKQSQQ
101: RGGRNKYKSN ETGKIQGVPV NRRENGARNH LAGSSASSGL LGRLPGLLRR QPPSNSDLPS SKVKKAPTTP SDAVTLSSLP FPAYQSAWAS ANPGQRTMAE
201: IVKMGRPNLQ KNVALPRSSE AQESSSKAPL KDECPSIEKQ DVSYLSSSVL KPSAESKISS DQFSESQHLD ETLLDDIHRE TKTYPTGSPP DVDHNPLASV
301: SSRNLVDDES RDSLVCDDEN NKAERHSYEE NQDEDVSTSV ATGFQQLTIY NEEEQEALPK EEKHAVIIPN HLQVHTSECL HLMFGCFSSG IGSGQPSALN
401: DNLEEPLVAE DDSSFRHPDT NFYGEEEAEQ PRNAVTNEQV SYQIDSSYRF ENNQLFHPPS ETNPQRQNLD TYPNIMQQGY TSSLPNTLLP SGIQDGRESN
501: LHYSPFTTLY NTEISMAEAL RAASISPQNA IPSAGQQAAT LAQHLALNPY SHQPEMPLGH YGNLISYPFM AQCYNPFMLS AFQQVFPTGN HQSLVDMLMQ
601: YKTQTTAPPV PPPSAYGFGG GAVSSNNFPL NPTSAANSYE DVLSSQFNES NHLASSLQQQ NEKTTAWHQG QQANSRVVPG SGYYSYPGHQ NQQPPGFRQA
701: QQLQHQQQSS QQQQQQQHYG GHGYVSPYHS QAVMSLEHLH HQYQQQQNAR DASKQSQQ
Arabidopsis Description
Kinase-related protein of unknown function (DUF1296) [Source:TAIR;Acc:AT4G18150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.