Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- vacuole 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G269500.1 | Wheat | nucleus | 90.46 | 93.14 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 86.55 | 92.51 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 89.43 | 92.29 |
| KXG33052 | Sorghum | nucleus | 67.01 | 70.84 |
| Zm00001d035703_P001 | Maize | nucleus | 21.95 | 70.74 |
| Os01t0663800-01 | Rice | plasma membrane | 68.39 | 69.92 |
| Zm00001d043962_P001 | Maize | nucleus | 66.78 | 69.0 |
| Zm00001d011517_P002 | Maize | nucleus | 65.86 | 68.21 |
| Zm00001d017358_P001 | Maize | nucleus | 8.62 | 68.18 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.06 | 55.7 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 9.43 | 53.59 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 57.36 | 52.69 |
| Zm00001d004950_P001 | Maize | nucleus | 18.05 | 50.65 |
| CDY61561 | Canola | cytosol | 3.56 | 46.97 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.52 | 45.28 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 43.33 | 45.15 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 41.03 | 42.05 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 41.72 | 39.89 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 40.23 | 39.86 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 39.77 | 39.72 |
| PGSC0003DMT400007972 | Potato | nucleus | 37.01 | 38.52 |
| Solyc02g071180.2.1 | Tomato | nucleus | 36.67 | 38.3 |
| KRH59101 | Soybean | nucleus | 35.75 | 36.8 |
| KRH42968 | Soybean | nucleus | 35.17 | 36.56 |
| Solyc03g005750.2.1 | Tomato | nucleus | 35.29 | 36.42 |
| KRH36716 | Soybean | nucleus | 34.94 | 36.28 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.74 | 35.85 |
| KRH11725 | Soybean | nucleus | 34.6 | 35.83 |
| CDY48333 | Canola | nucleus | 32.41 | 34.26 |
| AT1G29370.1 | Thale cress | nucleus | 32.64 | 34.18 |
| Bra030134.1-P | Field mustard | nucleus | 30.69 | 34.14 |
| CDY43334 | Canola | nucleus | 31.95 | 33.82 |
| AT1G29350.1 | Thale cress | nucleus | 32.3 | 33.81 |
| CDX90188 | Canola | nucleus | 31.84 | 33.7 |
| CDY15632 | Canola | nucleus | 30.23 | 33.46 |
| CDX94662 | Canola | nucleus | 30.8 | 33.29 |
| Bra021900.1-P | Field mustard | nucleus | 31.38 | 33.25 |
| Bra010832.1-P | Field mustard | nucleus | 31.38 | 33.21 |
| CDY43685 | Canola | nucleus | 31.49 | 33.01 |
| CDY61669 | Canola | nucleus | 27.93 | 32.84 |
| Bra022970.1-P | Field mustard | nucleus | 30.46 | 32.76 |
| Bra032310.1-P | Field mustard | nucleus | 32.18 | 32.6 |
| CDX99817 | Canola | nucleus | 23.22 | 32.58 |
| CDX84653 | Canola | nucleus | 30.11 | 32.23 |
| CDX78828 | Canola | nucleus | 25.75 | 32.09 |
| Bra013287.1-P | Field mustard | nucleus | 28.62 | 31.92 |
| CDY61562 | Canola | nucleus | 27.36 | 31.23 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 30.46 | 30.74 |
| AT4G18150.1 | Thale cress | nucleus | 25.63 | 29.42 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 21.49 | 27.91 |
| CDY08888 | Canola | nucleus | 15.17 | 22.88 |
| CDX76544 | Canola | nucleus | 14.83 | 22.67 |
| Bra021022.1-P | Field mustard | nucleus | 15.4 | 21.58 |
| CDY11787 | Canola | nucleus | 17.47 | 20.62 |
| AT5G46380.2 | Thale cress | nucleus | 15.52 | 20.39 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 12.3 | 20.04 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 18.85 | 18.41 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 15.98 | 16.13 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G060080.3 | EnsemblPlantsGene:HORVU3Hr1G060080 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| UniParc:UPI000B47D1F1 | UniProt:A0A287L8Z5 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:457705114..457725100
Molecular Weight (calculated)
92806.3 Da
IEP (calculated)
5.570
GRAVY (calculated)
-0.624
Length
870 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGGGGRG PAAGPVPASA RKLVQGLKEI VSRSDAEIYA ALRDCGMDPD EAVSRLLSQD TFQEVKNKRD KKKEVNKGTP EPRSRGANNS SSRAARGGTD
101: RTSRSSSVQS VSGGVGKIKN VCIHEFSHFS IIFLMPISIL LDHVASRSSI LGPGGSSTYS TQKLTAPSSF ANKNAVPDGS CGPLQSLSGF QQNWCGVPGQ
201: MSMADIVKMG RSQGRSSSKS TATADKAFAG QNPSLSNETN HNTKQSASTV PPTTFDQGFP ALPDPVPQVI NSNHASADSH QTQNVWFQQD GPPSQSQFTA
301: PEPSRSPLSF VASLESSVLV ADSVNLHEKS HTEDNTSIVK QTAIPSERHL EVLHDKVQFG DELLQNSSTY QSQMHSFGDE VEVSNVDVDS AATNFQHLSL
401: QNEDPSAANS ADDNPAVIIP DHLQLENTDC THLSFGSFES GAFSGLLPSK VPKYSVEEVP NSDETPSVDQ IDARNQDYYD NGALHSSANE DVETRIGTNI
501: ENIDVPSVSQ PDTLMQGALD VPGLQYNPPS VSDHVYPNTT QPNIMESQQG NTQAQHLSHF SGLLAHQANT LQNNFLGSNL TPHRDFDFSP FLSAQSAMKY
601: NPAVPTTSYP ISMQENLNQG GFSNTQSTQN PPSTSIPSGL PQPQQLSLHP YSQPTLPLGP FANLVGYPYL PQNYYVPPAA FQQAYSSNGP FHQSGGGAAA
701: LPGSATKYSM PQYKSSLPVT SPPQHSSAGS GYGGFGSSSN IPNFGQNQSA SPATTMGIDE ALSSQFKEAN HYMALQQSDN SAMWLHGAAG SRAVSAVPPG
801: NFYGFQGQST QGGFREVQQP SQYGGLGYPS FYQSQNGMQQ EHPQNPAEGS LNSSQNAPSQ PSHQMWQHSY
101: RTSRSSSVQS VSGGVGKIKN VCIHEFSHFS IIFLMPISIL LDHVASRSSI LGPGGSSTYS TQKLTAPSSF ANKNAVPDGS CGPLQSLSGF QQNWCGVPGQ
201: MSMADIVKMG RSQGRSSSKS TATADKAFAG QNPSLSNETN HNTKQSASTV PPTTFDQGFP ALPDPVPQVI NSNHASADSH QTQNVWFQQD GPPSQSQFTA
301: PEPSRSPLSF VASLESSVLV ADSVNLHEKS HTEDNTSIVK QTAIPSERHL EVLHDKVQFG DELLQNSSTY QSQMHSFGDE VEVSNVDVDS AATNFQHLSL
401: QNEDPSAANS ADDNPAVIIP DHLQLENTDC THLSFGSFES GAFSGLLPSK VPKYSVEEVP NSDETPSVDQ IDARNQDYYD NGALHSSANE DVETRIGTNI
501: ENIDVPSVSQ PDTLMQGALD VPGLQYNPPS VSDHVYPNTT QPNIMESQQG NTQAQHLSHF SGLLAHQANT LQNNFLGSNL TPHRDFDFSP FLSAQSAMKY
601: NPAVPTTSYP ISMQENLNQG GFSNTQSTQN PPSTSIPSGL PQPQQLSLHP YSQPTLPLGP FANLVGYPYL PQNYYVPPAA FQQAYSSNGP FHQSGGGAAA
701: LPGSATKYSM PQYKSSLPVT SPPQHSSAGS GYGGFGSSSN IPNFGQNQSA SPATTMGIDE ALSSQFKEAN HYMALQQSDN SAMWLHGAAG SRAVSAVPPG
801: NFYGFQGQST QGGFREVQQP SQYGGLGYPS FYQSQNGMQQ EHPQNPAEGS LNSSQNAPSQ PSHQMWQHSY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.