Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33052 | Sorghum | nucleus | 89.64 | 91.49 |
| Zm00001d043962_P001 | Maize | nucleus | 88.81 | 88.6 |
| Zm00001d017358_P001 | Maize | nucleus | 11.43 | 87.27 |
| Zm00001d035703_P001 | Maize | nucleus | 27.98 | 87.04 |
| Os01t0663800-01 | Rice | plasma membrane | 70.12 | 69.21 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 66.07 | 68.18 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 68.57 | 68.17 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 12.38 | 67.97 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 67.86 | 67.62 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 68.21 | 65.86 |
| Zm00001d004950_P001 | Maize | nucleus | 23.57 | 63.87 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.24 | 55.7 |
| Zm00001d009591_P006 | Maize | nucleus | 54.76 | 53.68 |
| CDY61561 | Canola | cytosol | 4.17 | 53.03 |
| Zm00001d039041_P007 | Maize | nucleus | 55.0 | 51.22 |
| Solyc09g018250.2.1 | Tomato | plastid | 6.31 | 50.0 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 12.02 | 45.09 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 43.81 | 44.07 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 42.5 | 42.05 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 41.9 | 40.09 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 43.33 | 40.0 |
| Zm00001d050118_P001 | Maize | mitochondrion | 19.29 | 38.57 |
| PGSC0003DMT400007972 | Potato | nucleus | 38.33 | 38.52 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 39.76 | 38.35 |
| Solyc02g071180.2.1 | Tomato | nucleus | 37.98 | 38.3 |
| Solyc03g005750.2.1 | Tomato | nucleus | 37.62 | 37.49 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 9.29 | 36.79 |
| KRH11725 | Soybean | nucleus | 36.67 | 36.67 |
| KRH36716 | Soybean | nucleus | 36.43 | 36.52 |
| KRH59101 | Soybean | nucleus | 36.43 | 36.21 |
| KRH42968 | Soybean | nucleus | 35.83 | 35.96 |
| Bra021900.1-P | Field mustard | nucleus | 33.93 | 34.71 |
| Bra030134.1-P | Field mustard | nucleus | 32.26 | 34.65 |
| CDY43685 | Canola | nucleus | 34.17 | 34.58 |
| AT1G29370.1 | Thale cress | nucleus | 33.93 | 34.3 |
| CDY15632 | Canola | nucleus | 32.02 | 34.22 |
| CDY43334 | Canola | nucleus | 33.45 | 34.18 |
| CDY48333 | Canola | nucleus | 33.45 | 34.14 |
| Zm00001d039138_P012 | Maize | nucleus | 33.69 | 34.14 |
| CDX90188 | Canola | nucleus | 33.33 | 34.06 |
| AT1G29350.1 | Thale cress | nucleus | 33.69 | 34.06 |
| Bra010832.1-P | Field mustard | nucleus | 32.98 | 33.7 |
| CDX94662 | Canola | nucleus | 32.26 | 33.66 |
| Zm00001d009683_P004 | Maize | nucleus | 33.69 | 33.26 |
| Bra022970.1-P | Field mustard | nucleus | 31.31 | 32.51 |
| Bra032310.1-P | Field mustard | nucleus | 33.21 | 32.48 |
| CDX84653 | Canola | nucleus | 31.19 | 32.23 |
| CDY61669 | Canola | nucleus | 28.33 | 32.16 |
| CDX99817 | Canola | nucleus | 23.69 | 32.1 |
| CDY61562 | Canola | nucleus | 29.05 | 32.02 |
| CDX78828 | Canola | nucleus | 25.95 | 31.23 |
| Bra013287.1-P | Field mustard | nucleus | 28.81 | 31.03 |
| AT4G18150.1 | Thale cress | nucleus | 26.55 | 29.42 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 23.21 | 29.1 |
| CDY08888 | Canola | nucleus | 14.88 | 21.66 |
| CDX76544 | Canola | nucleus | 14.64 | 21.62 |
| AT5G46380.2 | Thale cress | nucleus | 16.55 | 21.0 |
| Bra021022.1-P | Field mustard | nucleus | 15.12 | 20.45 |
| CDY11787 | Canola | nucleus | 17.5 | 19.95 |
| Zm00001d050112_P011 | Maize | nucleus | 17.26 | 17.12 |
| Zm00001d044979_P010 | Maize | nucleus | 16.55 | 16.31 |
| Zm00001d037122_P009 | Maize | nucleus | 16.19 | 15.81 |
| Zm00001d029487_P001 | Maize | nucleus | 11.67 | 13.28 |
Protein Annotations
| EnsemblPlants:Zm00001d011517_P002 | EnsemblPlants:Zm00001d011517_T002 | EnsemblPlantsGene:Zm00001d011517 | EntrezGene:103636139 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | PFAM:PF06972 |
| ProteinID:AQK97102.1 | ProteinID:AQK97103.1 | SEG:seg | SUPFAM:SSF46934 | UniParc:UPI00022212EE | UniProt:K7V0B9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative DUF1296 domain containing family protein
Coordinates
chr8:-:153158834..153167071
Molecular Weight (calculated)
89117.9 Da
IEP (calculated)
5.008
GRAVY (calculated)
-0.622
Length
840 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSGSGSGG GGARGQSGPV PASARKLVQG LKEIVNRPDA EIYAALRECG MDPDEAVSRL LCQDTFQEVK SKRDKKKEVK ETLDPRSRGA SNSCRSSRGG
101: MDRAGRSSSV QSGSSGTDYV TSRSSILGPA VPVKPTVPSL STNKDVVFNG SVGAPQSSSG FQHNWFGVPG QMSMADIVKM GRPQVRSSGK PMAAADTSYA
201: GQTPSLSSSV NQNSKQSAST TLPTTFDQGF PALPDPIPHT VNSSHGSAGN NHTHENDWFP QDEPQSGVQS TGIEASGDQS LSVASLDQSM LVAGTAYSQE
301: NSHAEENNST AVKATVSSER HLEIVEEDNH YNDGLLQNCA YQAQVHSYVD NEVGVSNVDA ESAVANFQHL SLQNEDIVVT KSEDNHAVIL PDHLQATNAD
401: CAHLSFGSFE SGAFSGLFSS KVTKDSLEDN EVHIPDESPS VNLDARNQDY YDNDALNLSA NEDVETRIGT NMDNIDGPSV SQSDVPRQGA IDVPGLQYDM
501: PSVPSHAYSS TTQPSKMEDP QGNTQAQPLS HFSGLLQANT LPNYLLGSNL TPIREFDFSQ LLQTQSATKY NPSAAPNNLP AISMQETLKP GGFPNTQSTQ
601: HVPNTSIPSG LPLPQQLPVY SQPTLPLGPF TSLVGYPYLP QNYYLPSAAF QQAYSSNGPF HQSGAPAVPG AGMKYSMPQY KSSPPASSLP QPSSLSGYGG
701: FGNANNIPGN FSLNQGAPSA PTTLGFDEAL GTQFKDPNHY AALQQSDNSA MWLHGGAGSR TVSAVPPGNF YGLQGQSQQG GFRQAHQPSQ YGGLGYPSFY
801: QSQSQASLPQ EHPQNLTEGS LNNSQGVPSQ PSHHLWQHSY
101: MDRAGRSSSV QSGSSGTDYV TSRSSILGPA VPVKPTVPSL STNKDVVFNG SVGAPQSSSG FQHNWFGVPG QMSMADIVKM GRPQVRSSGK PMAAADTSYA
201: GQTPSLSSSV NQNSKQSAST TLPTTFDQGF PALPDPIPHT VNSSHGSAGN NHTHENDWFP QDEPQSGVQS TGIEASGDQS LSVASLDQSM LVAGTAYSQE
301: NSHAEENNST AVKATVSSER HLEIVEEDNH YNDGLLQNCA YQAQVHSYVD NEVGVSNVDA ESAVANFQHL SLQNEDIVVT KSEDNHAVIL PDHLQATNAD
401: CAHLSFGSFE SGAFSGLFSS KVTKDSLEDN EVHIPDESPS VNLDARNQDY YDNDALNLSA NEDVETRIGT NMDNIDGPSV SQSDVPRQGA IDVPGLQYDM
501: PSVPSHAYSS TTQPSKMEDP QGNTQAQPLS HFSGLLQANT LPNYLLGSNL TPIREFDFSQ LLQTQSATKY NPSAAPNNLP AISMQETLKP GGFPNTQSTQ
601: HVPNTSIPSG LPLPQQLPVY SQPTLPLGPF TSLVGYPYLP QNYYLPSAAF QQAYSSNGPF HQSGAPAVPG AGMKYSMPQY KSSPPASSLP QPSSLSGYGG
701: FGNANNIPGN FSLNQGAPSA PTTLGFDEAL GTQFKDPNHY AALQQSDNSA MWLHGGAGSR TVSAVPPGNF YGLQGQSQQG GFRQAHQPSQ YGGLGYPSFY
801: QSQSQASLPQ EHPQNLTEGS LNNSQGVPSQ PSHHLWQHSY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.