CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043962_P001	Maize	nucleus	92.35	90.26
Zm00001d011517_P002	Maize	nucleus	91.49	89.64
Zm00001d035703_P001	Maize	nucleus	29.28	89.26
Zm00001d017358_P001	Maize	nucleus	11.79	88.18
Os01t0663800-01	Rice	plasma membrane	72.66	70.27
TraesCS3B01G269500.1	Wheat	nucleus	71.57	69.7
TraesCS3A01G241400.3	Wheat	nucleus	68.53	69.29
TraesCS3D01G241600.2	Wheat	nucleus	70.72	69.04
Zm00001d035814_P001	Maize	cytosol, mitochondrion, nucleus, plastid, vacuole	12.64	67.97
HORVU3Hr1G060080.3	Barley	cytosol, nucleus, vacuole	70.84	67.01
Zm00001d004950_P001	Maize	nucleus	23.94	63.55
KRH38470	Soybean	endoplasmic reticulum	5.59	58.23
KXG22544	Sorghum	nucleus	57.72	55.49
CDY61561	Canola	cytosol	4.13	51.52
Solyc09g018250.2.1	Tomato	plastid	6.44	50.0
GSMUA_Achr7P25510_001	Banana	nucleus	44.71	44.07
GSMUA_Achr4P14940_001	Banana	nucleus	44.35	42.99
GSMUA_Achr3P31170_001	Banana	nucleus	42.65	39.98
GSMUA_Achr4P07880_001	Banana	nucleus	43.99	39.78
VIT_10s0003g02740.t01	Wine grape	nucleus	41.43	39.15
PGSC0003DMT400007972	Potato	nucleus	39.73	39.11
Solyc02g071180.2.1	Tomato	nucleus	39.0	38.54
Solyc03g005750.2.1	Tomato	nucleus	38.76	37.84
KRH36716	Soybean	nucleus	38.15	37.47
VIT_19s0014g03260.t01	Wine grape	nucleus	9.6	37.26
KRH11725	Soybean	nucleus	38.03	37.26
KRH59101	Soybean	nucleus	37.91	36.92
KRH42968	Soybean	nucleus	37.18	36.56
Bra021900.1-P	Field mustard	nucleus	35.12	35.2
Bra030134.1-P	Field mustard	nucleus	33.41	35.17
KXG22612	Sorghum	nucleus	35.36	34.98
CDY43685	Canola	nucleus	35.24	34.94
CDY15632	Canola	nucleus	33.17	34.73
AT1G29370.1	Thale cress	nucleus	34.99	34.66
CDY43334	Canola	nucleus	34.51	34.55
CDX90188	Canola	nucleus	34.39	34.43
AT1G29350.1	Thale cress	nucleus	34.75	34.42
CDY48333	Canola	nucleus	34.39	34.39
CDX94662	Canola	nucleus	33.54	34.29
Bra010832.1-P	Field mustard	nucleus	34.02	34.06
CDY61669	Canola	nucleus	29.65	32.97
Bra022970.1-P	Field mustard	nucleus	32.32	32.88
Bra032310.1-P	Field mustard	nucleus	34.26	32.83
CDX84653	Canola	nucleus	32.32	32.72
CDX99817	Canola	nucleus	24.42	32.42
CDX78828	Canola	nucleus	27.34	32.23
CDY61562	Canola	nucleus	29.77	32.15
Bra013287.1-P	Field mustard	nucleus	30.26	31.92
CDY37665	Canola	cytosol, nucleus, plastid	24.18	29.7
AT4G18150.1	Thale cress	nucleus	27.22	29.55
CDY08888	Canola	nucleus	15.55	22.18
CDX76544	Canola	nucleus	15.31	22.14
AT5G46380.2	Thale cress	nucleus	16.89	21.0
Bra021022.1-P	Field mustard	nucleus	15.67	20.77
CDY11787	Canola	nucleus	18.47	20.62
KXG24955	Sorghum	nucleus	17.86	18.08
EER88029	Sorghum	nucleus	17.74	17.0
KXG39164	Sorghum	nucleus	11.66	12.24

Protein Annotations

EnsemblPlants:KXG33052	EnsemblPlantsGene:SORBI_3003G247300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GIP1
InterPro:UBA-like_sf	PANTHER:PTHR12758	PANTHER:PTHR12758:SF35	PFAM:PF06972	ProteinID:KXG33052	ProteinID:KXG33052.1
SEG:seg	SUPFAM:SSF46934	UniParc:UPI0002207279	UniProt:A0A1B6Q562	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr3:-:58601290..58609905

Molecular Weight (calculated)

87098.5 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.652

Length

823 amino acids

Sequence
(BLAST)

001: MSGGGGGGGG GGARGPSGPV PASARKLVQG LKEIVNRPDA EIYAALRECD MDPDEAVSRL LSQDTFQEVK SKRDKKKEVK ETPEPRSRGA SNSSRSSRGG
101: GDRAGRSSVQ SGSSDYMASR SSILGPAVPA TNAMQKPAVP SSSTNKDVVP NGSVGAPQSS SGFQHNWFGV PGQMSMADIV KMGRPQVRSS GKPMAAAKQS
201: TSTALPTTFD QGFPALPDPI PHTVNSSHGS AGNNHTHEND WFPRDEPPSG AQSTGIEASG DQSLSVASLD QSMLVADAAY SQENSHAEEN NSIAVKATLS
301: SERHLEIVEE DNHFNDGLQN SSAYQAQLHS YVDNEVEISN VDAESAAANF QHLSLQNEDT VATKSAEDNP AVILPDHLQA ANADCAHLSF GSFESGAFSG
401: LLSSKVPKGS LEDNEVHIPD ESPSVNRIDV RNQDYYDNDA LNSSANEDVE TRIGTNMDNI DGPSVSESDV LRQGAIDVPG LQYELPSVSS HAYSNTTQPI
501: TMEDPQGNTQ AQPLSHFSGL LQANTLPNNL LGSNHTPLRE FDFSQLLQTQ SAPKYNPSVA PNNLPAISMQ ETLKPGGFPN TQSTQHVPST SIPSGLPLPQ
601: QLPVYSQPTL PLGPFTSLVG YPYLPQNYYL PSAAFQQAYS SNGPFHQSAA PAVPGAGMKY SMPQYKSSPP ASSLPQPSSL SGYGGFGNAN NIPGNFSLNQ
701: GAPSAPTTLG FDEALGTQFK DPNHYAALQQ SDNSAMWLHG GAGSRTVSAV PPGNFYGFQG QSQQGGFRQT HQPSQYGGLG YPSFYQSQAS LPQEHPQNPT
801: EGSLNNPQGV PSQPSHQLWQ HSY

Best Arabidopsis Sequence Match ( AT1G29370.1 )
(BLAST)

001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y

Arabidopsis Description

RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.