CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009591_P006	Maize	nucleus	89.6	89.5
Zm00001d039041_P007	Maize	nucleus	91.24	86.59
Zm00001d015193_P001	Maize	nucleus, plastid	21.96	83.93
Os05t0566900-01	Rice	extracellular	68.81	69.13
TraesCS1A01G403900.1	Wheat	nucleus	66.94	66.09
TraesCS1D01G411700.1	Wheat	nucleus	67.06	65.98
TraesCS1B01G433400.1	Wheat	nucleus	67.06	65.75
HORVU1Hr1G089280.1	Barley	nucleus	66.71	60.3
KRH38470	Soybean	endoplasmic reticulum	5.49	59.49
KXG33052	Sorghum	nucleus	55.49	57.72
CDY61561	Canola	cytosol	4.21	54.55
GSMUA_Achr7P25510_001	Banana	nucleus	43.34	44.43
Solyc09g018250.2.1	Tomato	plastid	5.37	43.4
GSMUA_Achr4P14940_001	Banana	nucleus	42.76	43.11
GSMUA_Achr3P31170_001	Banana	nucleus	41.71	40.66
GSMUA_Achr4P07880_001	Banana	nucleus	43.22	40.66
PGSC0003DMT400007972	Potato	nucleus	37.97	38.88
VIT_10s0003g02740.t01	Wine grape	nucleus	39.49	38.81
Solyc02g071180.2.1	Tomato	nucleus	37.15	38.18
KRH42968	Soybean	nucleus	36.22	37.04
Solyc03g005750.2.1	Tomato	nucleus	36.45	37.01
KRH59101	Soybean	nucleus	36.33	36.8
KRH36716	Soybean	nucleus	35.05	35.8
Bra030134.1-P	Field mustard	nucleus	32.59	35.68
CDY48333	Canola	nucleus	34.23	35.6
CDX90188	Canola	nucleus	34.11	35.52
CDY15632	Canola	nucleus	32.59	35.5
CDY43334	Canola	nucleus	34.0	35.4
Bra010832.1-P	Field mustard	nucleus	34.0	35.4
VIT_19s0014g03260.t01	Wine grape	nucleus	8.76	35.38
KRH11725	Soybean	nucleus	34.35	35.0
AT1G29370.1	Thale cress	nucleus	33.88	34.9
CDY43685	Canola	nucleus	33.76	34.82
AT1G29350.1	Thale cress	nucleus	33.76	34.78
Bra021900.1-P	Field mustard	nucleus	33.29	34.71
CDX94662	Canola	nucleus	32.59	34.66
Bra032310.1-P	Field mustard	nucleus	34.0	33.88
Bra022970.1-P	Field mustard	nucleus	31.89	33.75
CDX84653	Canola	nucleus	31.66	33.33
KXG22612	Sorghum	nucleus	32.13	33.05
CDX99817	Canola	nucleus	23.83	32.9
CDX78828	Canola	nucleus	26.29	32.23
CDY61669	Canola	nucleus	27.8	32.16
Bra013287.1-P	Field mustard	nucleus	29.21	32.05
CDY61562	Canola	nucleus	28.39	31.89
CDY37665	Canola	cytosol, nucleus, plastid	23.6	30.15
AT4G18150.1	Thale cress	nucleus	26.29	29.68
CDY08888	Canola	nucleus	16.12	23.92
CDX76544	Canola	nucleus	15.65	23.55
Bra021022.1-P	Field mustard	nucleus	16.24	22.38
AT5G46380.2	Thale cress	nucleus	16.12	20.85
CDY11787	Canola	nucleus	16.82	19.54
KXG24955	Sorghum	nucleus	17.64	18.57
EER88029	Sorghum	nucleus	17.17	17.11
KXG39164	Sorghum	nucleus	12.03	13.14

Protein Annotations

EnsemblPlants:KXG22544	EnsemblPlantsGene:SORBI_3009G234700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GIP1
InterPro:UBA-like_sf	PANTHER:PTHR12758	PANTHER:PTHR12758:SF35	PFAM:PF06972	ProteinID:KXG22544	ProteinID:KXG22544.1
SEG:seg	SUPFAM:SSF46934	UniParc:UPI00081AD3F9	UniProt:A0A1B6P9Z4	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr9:+:57395387..57404990

Molecular Weight (calculated)

91354.3 Da

IEP (calculated)

5.094

GRAVY (calculated)

-0.708

Length

856 amino acids

Sequence
(BLAST)

001: MSGGGAGGKG AAAPVPPGSR KLVQSLKEIV NRPEAEIYAA LRECGMDPDE AVSRLLSQDT FQEVKSKRDK KKEIKEVPET RYRSANSSTN RGLRSGADRG
101: GRSNSVHSSS TDNMTSRPPV SGSGTASVNS SQRQTMASSS ANKHMVTDGP AVSLQSSSGF QHGGWSGTPG QLSMADIVKM GRPQGKASSK PVVTADRGYA
201: GQYPSLPSTN QNLKQSVSMV PPTELDKGLQ PAQDSVQVMN HGHSAADSKL PYGTDWSPQD DPTSANQSSL PETSGDPSLY EASFQSSTLV TDVVNSHENL
301: HLDEDSTFAM RPVPASEIHL EPSDGISEYN DGMLNNSSSY QPQNYSYTEQ EVEDSSADLS AAAAAANFQS LSLHNDELAA KKTAEDNPAV IIPDHLQVTN
401: TECVSLSFGS FGSGAFSGLL PQKTMDSNVE FPAREESAPV DQIDARNQDY YESGAVTSPV DENLEAMLGA NIENVDAPSV SQPNELRQDV LDPSGLQYDV
501: PSVSSHAYSN TNASQPSTME DPQGNNQAHT FSHLSNLMQA NPLSTSSLLG SNQNHAALHG LEFDLPPYLE AKYNTGSTTN PRPAISMQEA LKAGVFSNAQ
601: STQSLPSTSI PTGPPLPQQL AHHPYSQPTL PITHFPNMVG YPTYLPQNYA TYLSSGTFQQ AYPSNGPFHQ SAAALLGSGM KYSTPEYKNN LSATGLQQQH
701: QPQPQPPSSV ISGYGGFGSS GNIQGNFTLN QSTGSASTLG FDEALSRQYK DTSQYMALQQ GDNSGMWLHG SGSRATSTLP PNHFYGYQGQ SQLGGFRQAQ
801: QPQPSQFGGH GYPTFYQSQG GLTQEHPQNL AEGSLNGFQV APSQPSHPNW QHQHTY

Best Arabidopsis Sequence Match ( AT1G29370.1 )
(BLAST)

001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y

Arabidopsis Description

RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.