Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH42968 | Soybean | nucleus | 92.54 | 93.43 |
KRH38470 | Soybean | endoplasmic reticulum | 7.1 | 75.95 |
KRH36716 | Soybean | nucleus | 72.66 | 73.27 |
KRH11725 | Soybean | nucleus | 72.66 | 73.1 |
CDY61561 | Canola | cytosol | 4.97 | 63.64 |
VIT_10s0003g02740.t01 | Wine grape | nucleus | 61.89 | 60.05 |
Solyc09g018250.2.1 | Tomato | plastid | 7.34 | 58.49 |
PGSC0003DMT400007972 | Potato | nucleus | 51.95 | 52.51 |
Solyc02g071180.2.1 | Tomato | nucleus | 51.72 | 52.46 |
Bra021900.1-P | Field mustard | nucleus | 48.64 | 50.06 |
Solyc03g005750.2.1 | Tomato | nucleus | 49.59 | 49.7 |
AT1G29370.1 | Thale cress | nucleus | 48.52 | 49.34 |
AT1G29350.1 | Thale cress | nucleus | 48.28 | 49.1 |
CDY43334 | Canola | nucleus | 47.57 | 48.91 |
CDX90188 | Canola | nucleus | 47.34 | 48.66 |
CDY43685 | Canola | nucleus | 47.69 | 48.55 |
Bra010832.1-P | Field mustard | nucleus | 47.22 | 48.54 |
CDY48333 | Canola | nucleus | 47.22 | 48.48 |
Bra022970.1-P | Field mustard | nucleus | 46.39 | 48.45 |
CDY15632 | Canola | nucleus | 44.97 | 48.35 |
Bra030134.1-P | Field mustard | nucleus | 44.73 | 48.34 |
CDX84653 | Canola | nucleus | 46.04 | 47.85 |
VIT_19s0014g03260.t01 | Wine grape | nucleus | 11.95 | 47.64 |
CDX99817 | Canola | nucleus | 34.91 | 47.58 |
CDX94662 | Canola | nucleus | 45.33 | 47.58 |
Zm00001d017358_P001 | Maize | nucleus | 6.15 | 47.27 |
CDY61562 | Canola | nucleus | 41.89 | 46.46 |
Zm00001d035703_P001 | Maize | nucleus | 14.79 | 46.3 |
Bra032310.1-P | Field mustard | nucleus | 46.63 | 45.87 |
GSMUA_Achr7P25510_001 | Banana | nucleus | 43.67 | 44.19 |
CDY37665 | Canola | cytosol, nucleus, plastid | 34.67 | 43.73 |
CDY61669 | Canola | nucleus | 37.4 | 42.7 |
GSMUA_Achr4P14940_001 | Banana | nucleus | 41.66 | 41.46 |
Bra013287.1-P | Field mustard | nucleus | 38.22 | 41.41 |
CDX78828 | Canola | nucleus | 34.08 | 41.26 |
AT4G18150.1 | Thale cress | nucleus | 35.86 | 39.97 |
GSMUA_Achr3P31170_001 | Banana | nucleus | 41.42 | 39.86 |
GSMUA_Achr4P07880_001 | Banana | nucleus | 42.49 | 39.45 |
Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 7.1 | 39.22 |
Os05t0566900-01 | Rice | extracellular | 39.05 | 38.73 |
Os01t0663800-01 | Rice | plasma membrane | 38.22 | 37.96 |
KXG33052 | Sorghum | nucleus | 36.92 | 37.91 |
TraesCS3B01G269500.1 | Wheat | nucleus | 37.04 | 37.04 |
TraesCS3A01G241400.3 | Wheat | nucleus | 35.38 | 36.73 |
TraesCS3D01G241600.2 | Wheat | nucleus | 36.57 | 36.65 |
Zm00001d011517_P002 | Maize | nucleus | 36.21 | 36.43 |
Zm00001d043962_P001 | Maize | nucleus | 36.21 | 36.34 |
KXG22544 | Sorghum | nucleus | 36.8 | 36.33 |
TraesCS1D01G411700.1 | Wheat | nucleus | 37.28 | 36.21 |
TraesCS1B01G433400.1 | Wheat | nucleus | 37.4 | 36.2 |
TraesCS1A01G403900.1 | Wheat | nucleus | 37.04 | 36.1 |
HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 36.8 | 35.75 |
Zm00001d009591_P006 | Maize | nucleus | 35.74 | 35.24 |
Zm00001d039041_P007 | Maize | nucleus | 35.62 | 33.37 |
HORVU1Hr1G089280.1 | Barley | nucleus | 37.4 | 33.37 |
Zm00001d039138_P012 | Maize | nucleus | 32.07 | 32.69 |
Zm00001d004950_P001 | Maize | nucleus | 11.83 | 32.26 |
KXG22612 | Sorghum | nucleus | 31.6 | 32.09 |
Zm00001d015193_P001 | Maize | nucleus, plastid | 8.4 | 31.7 |
Os05t0581800-01 | Rice | nucleus | 31.12 | 30.87 |
TraesCS1A01G420300.1 | Wheat | nucleus | 30.77 | 30.77 |
TraesCS1D01G428100.1 | Wheat | nucleus | 30.65 | 30.4 |
CDY11787 | Canola | nucleus | 26.39 | 30.26 |
Zm00001d009683_P004 | Maize | nucleus | 29.7 | 29.49 |
KRG98923 | Soybean | nucleus | 6.98 | 29.21 |
CDY08888 | Canola | nucleus | 18.7 | 27.38 |
HORVU1Hr1G091730.18 | Barley | mitochondrion | 27.46 | 26.91 |
TraesCS1B01G450700.1 | Wheat | nucleus | 27.1 | 26.85 |
CDX76544 | Canola | nucleus | 17.99 | 26.71 |
KRH46046 | Soybean | nucleus | 24.26 | 25.28 |
Bra021022.1-P | Field mustard | nucleus | 18.34 | 24.96 |
AT5G46380.2 | Thale cress | nucleus | 18.46 | 23.57 |
KRH16977 | Soybean | nucleus | 23.55 | 22.67 |
KRH72609 | Soybean | nucleus | 23.55 | 22.51 |
KRH14203 | Soybean | nucleus | 18.22 | 19.92 |
KRH73929 | Soybean | nucleus | 17.4 | 19.24 |
KRH47571 | Soybean | nucleus | 18.22 | 17.84 |
KRH06147 | Soybean | nucleus | 18.11 | 17.79 |
Protein Annotations
EMBL:ACUP02003299 | EnsemblPlants:KRH59101 | EnsemblPlantsGene:GLYMA_05G165300 | EntrezGene:100776017 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 |
ProteinID:KRH59101 | ProteinID:KRH59101.1 | SEG:seg | SUPFAM:SSF46934 | UniParc:UPI00023C4ABD | UniProt:I1K465 |
MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:35593651..35600917
Molecular Weight (calculated)
90464.9 Da
IEP (calculated)
5.391
GRAVY (calculated)
-0.709
Length
845 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKGGGGQK AGIPPASRKM VQSLKEIVSN IPEHEIYATL KDCNMDPNEA VSRLLSQDTF HEVKSKREKK KEGKDTTDSR SRVVSNTSSR GGGARVSADR
101: YVGRGGATQF SSGGDSGLLQ GKPVLKKENG TPAYGGLTAP ASSALDNNVN RQLPSYSDSV RVCDGLSSSQ YGGMQSPWVA NPGQVSMADI VRMGRPQAKA
201: SMHNSSLHSG SHQNVFAPPE ASHNNLHSLQ GHASKVSETN NDRGFAINSN VEQNDEWPLI EHQPAVSVSS VVDDHPTSEY HTNSSNSGEA NQQLKTHVNE
301: FVAEDDPVEN PDNVGSASIS EENPESTSVF DGSTYKDINS YQSHRHPFET NEAEGGVSSV AANLEQLNLH SNDQGTEQEE ENSSVVIPNH LQLHSAECLN
401: LSFGSFGSAN DASLSGSGPY ASRPLKSNLE DTSGANDVST IGSSDVRNPD YYGDEHLTTT SDGNVAHITG VDAGTYEHSS ISQSEALKSE PPETAQENQY
501: SFPSSHEFTY ENAQQPDVTY PHSQTSSQIQ NLSPFSSVMA YTNSLPSALL ASTVQTARED IPYSPFPATQ SMPAKYSNIA SSIGGPTINM SEALRANNIS
601: TPQPNPQALP GANVATGPAL PQHLAVHPYS QPTLPLGHFA NMISYPFLPQ SYTYMPSAFQ QAFPGNSTYH QSLAAMLPQY KNSISVSSLP QSAAAAAVAS
701: GYGFGSSTSI PGGNYPLNPP AAPTSTTIGY DDVINSQFKE NNHIISLQQN ENSPMWVHGP SSRTMSAVPP STYYSFQGQN QQPGGFRQSQ QPSQQHFGSL
801: GYPNFYHSQT GISLEHQQQN PREASLAGSQ SQPPKQSQQI WQNSY
101: YVGRGGATQF SSGGDSGLLQ GKPVLKKENG TPAYGGLTAP ASSALDNNVN RQLPSYSDSV RVCDGLSSSQ YGGMQSPWVA NPGQVSMADI VRMGRPQAKA
201: SMHNSSLHSG SHQNVFAPPE ASHNNLHSLQ GHASKVSETN NDRGFAINSN VEQNDEWPLI EHQPAVSVSS VVDDHPTSEY HTNSSNSGEA NQQLKTHVNE
301: FVAEDDPVEN PDNVGSASIS EENPESTSVF DGSTYKDINS YQSHRHPFET NEAEGGVSSV AANLEQLNLH SNDQGTEQEE ENSSVVIPNH LQLHSAECLN
401: LSFGSFGSAN DASLSGSGPY ASRPLKSNLE DTSGANDVST IGSSDVRNPD YYGDEHLTTT SDGNVAHITG VDAGTYEHSS ISQSEALKSE PPETAQENQY
501: SFPSSHEFTY ENAQQPDVTY PHSQTSSQIQ NLSPFSSVMA YTNSLPSALL ASTVQTARED IPYSPFPATQ SMPAKYSNIA SSIGGPTINM SEALRANNIS
601: TPQPNPQALP GANVATGPAL PQHLAVHPYS QPTLPLGHFA NMISYPFLPQ SYTYMPSAFQ QAFPGNSTYH QSLAAMLPQY KNSISVSSLP QSAAAAAVAS
701: GYGFGSSTSI PGGNYPLNPP AAPTSTTIGY DDVINSQFKE NNHIISLQQN ENSPMWVHGP SSRTMSAVPP STYYSFQGQN QQPGGFRQSQ QPSQQHFGSL
801: GYPNFYHSQT GISLEHQQQN PREASLAGSQ SQPPKQSQQI WQNSY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.