Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P31170_001 | Banana | nucleus | 71.74 | 68.22 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 68.38 | 67.26 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 70.54 | 64.73 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.99 | 63.29 |
| CDY61561 | Canola | cytosol | 4.79 | 60.61 |
| Zm00001d017358_P001 | Maize | nucleus | 7.19 | 54.55 |
| Zm00001d035703_P001 | Maize | nucleus | 16.89 | 52.22 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 5.03 | 47.19 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 48.02 | 46.04 |
| Os01t0663800-01 | Rice | plasma membrane | 45.87 | 45.01 |
| Os05t0566900-01 | Rice | extracellular | 45.63 | 44.72 |
| KXG33052 | Sorghum | nucleus | 44.07 | 44.71 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 44.43 | 43.91 |
| Zm00001d011517_P002 | Maize | nucleus | 44.07 | 43.81 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 44.19 | 43.77 |
| KRH59101 | Soybean | nucleus | 44.19 | 43.67 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.51 | 43.4 |
| KXG22544 | Sorghum | nucleus | 44.43 | 43.34 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 45.15 | 43.33 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 41.92 | 43.0 |
| KRH42968 | Soybean | nucleus | 42.87 | 42.77 |
| Solyc02g071180.2.1 | Tomato | nucleus | 42.52 | 42.62 |
| PGSC0003DMT400007972 | Potato | nucleus | 42.63 | 42.58 |
| Zm00001d043962_P001 | Maize | nucleus | 42.87 | 42.52 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 44.07 | 42.3 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 43.71 | 42.1 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 43.83 | 41.92 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 7.66 | 41.83 |
| KRH36716 | Soybean | nucleus | 40.96 | 40.81 |
| Zm00001d009591_P006 | Maize | nucleus | 41.8 | 40.72 |
| KRH11725 | Soybean | nucleus | 40.6 | 40.36 |
| Solyc03g005750.2.1 | Tomato | nucleus | 40.24 | 39.86 |
| Zm00001d039041_P007 | Maize | nucleus | 42.87 | 39.69 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 44.31 | 39.07 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 9.82 | 38.68 |
| CDY48333 | Canola | nucleus | 37.96 | 38.52 |
| Bra030134.1-P | Field mustard | nucleus | 35.81 | 38.24 |
| Bra021900.1-P | Field mustard | nucleus | 37.37 | 38.0 |
| CDY43334 | Canola | nucleus | 37.37 | 37.96 |
| Zm00001d039138_P012 | Maize | nucleus | 37.6 | 37.88 |
| CDY15632 | Canola | nucleus | 35.57 | 37.79 |
| Zm00001d004950_P001 | Maize | nucleus | 14.01 | 37.74 |
| CDY43685 | Canola | nucleus | 37.13 | 37.35 |
| CDX90188 | Canola | nucleus | 36.65 | 37.23 |
| CDX94662 | Canola | nucleus | 35.81 | 37.14 |
| Bra010832.1-P | Field mustard | nucleus | 36.53 | 37.1 |
| AT1G29370.1 | Thale cress | nucleus | 36.89 | 37.06 |
| AT1G29350.1 | Thale cress | nucleus | 36.89 | 37.06 |
| KXG22612 | Sorghum | nucleus | 36.89 | 37.02 |
| Os05t0581800-01 | Rice | nucleus | 37.72 | 36.97 |
| Bra032310.1-P | Field mustard | nucleus | 37.6 | 36.55 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 36.89 | 36.45 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 37.13 | 36.38 |
| CDX99817 | Canola | nucleus | 26.95 | 36.29 |
| Bra022970.1-P | Field mustard | nucleus | 34.49 | 35.6 |
| CDX84653 | Canola | nucleus | 34.49 | 35.42 |
| Zm00001d009683_P004 | Maize | nucleus | 35.93 | 35.25 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 9.22 | 34.38 |
| CDY61669 | Canola | nucleus | 29.34 | 33.11 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 33.53 | 32.83 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 33.53 | 32.48 |
| Bra013287.1-P | Field mustard | nucleus | 30.3 | 32.44 |
| CDY61562 | Canola | nucleus | 29.58 | 32.41 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 25.99 | 32.39 |
| CDX78828 | Canola | nucleus | 27.07 | 32.38 |
| AT4G18150.1 | Thale cress | nucleus | 28.14 | 31.0 |
| CDY08888 | Canola | nucleus | 16.89 | 24.44 |
| CDX76544 | Canola | nucleus | 16.65 | 24.43 |
| Bra021022.1-P | Field mustard | nucleus | 16.89 | 22.71 |
| CDY11787 | Canola | nucleus | 19.76 | 22.39 |
| AT5G46380.2 | Thale cress | nucleus | 17.48 | 22.05 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 20.48 | 20.38 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 21.2 | 20.18 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 20.36 | 19.72 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 14.01 | 18.22 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 17.37 | 17.08 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 13.05 | 14.08 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P25510_001 | EnsemblPlants:GSMUA_Achr7T25510_001 | EnsemblPlantsGene:GSMUA_Achr7G25510_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI0002956B39 | UniProt:M0TKN7 | MapMan:35.2 | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G25510_001]
Coordinates
chr7:-:27109163..27122835
Molecular Weight (calculated)
89524.0 Da
IEP (calculated)
6.263
GRAVY (calculated)
-0.496
Length
835 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAGGGGNR GSVAAPIPTG SRKLVQSLKE IVNCPEAEIY SMLRECNMDP NEAVHRLLSQ DTFHEVKSKR DKKKEIREPP ESRSRTVNNS SGRGARGGLD
101: RGVRSTSSQS SSIGRMIYHY GFAIYVFKNA TLMPFKSTPM GNTIQATTVA DGISMPMQPP SGFQNSWLGK PGHVSMADIV KMGRSQGKPI GMPSGASEGS
201: DMAQNVVMLN MSHHNGKQSP TTVPLESDKR SDSFQESIHP MNSVSTTSEV SDACAAYGNP LESASSNLVV DGTNLHIDPH LEEIQDLEKS HNVKNPPAES
301: RSTSVSDRQI QVDTSKDASH LIEDLLKSTN SYQSQMLELD HQEGSFPAED VLELSSATAD LRQLSLHEET STKSIEGSSA VIIPNHLRVT NADCAHLSFG
401: SFGSGAFSGS FPSKQLKSNL EVPPVADDAS RIDDSDTRNH EYDNNGQLEP TLTENVVSRS GSGSENLDVP LVSQPEVVRN DPLDTAHVLQ YNFPSASDYA
501: LSSAAQPNAA AFSFPQGNTQ VQTLSPFSSL MQPNTLQNSI LASSIPHLRD FDLPLSPLLT TQAMPTRYST TVSSISGPTI STPEALNPGV FSNPQSTPQL
601: PSTTMLTSPA LPQHLPVHHY SQPALPLGHF ANMISYPFLP HSYTYLPSIQ QAFAANSPFH QSPAAVPSVG MKYSQPQFKS SLSATSLPQA SAIASAYGGL
701: GSSANIPGAF ILNHTTASAS TTIGFDEALS LQYKEGSHYL PLQQSENPAM WIHGAGSRTM SALPASTFYN YPGQNQHSGI RPSQQTSQLG ALGYPNLYHS
801: QAGPSREHQQ NPGEGNLNGS QTPSQPANQI WQHGY
101: RGVRSTSSQS SSIGRMIYHY GFAIYVFKNA TLMPFKSTPM GNTIQATTVA DGISMPMQPP SGFQNSWLGK PGHVSMADIV KMGRSQGKPI GMPSGASEGS
201: DMAQNVVMLN MSHHNGKQSP TTVPLESDKR SDSFQESIHP MNSVSTTSEV SDACAAYGNP LESASSNLVV DGTNLHIDPH LEEIQDLEKS HNVKNPPAES
301: RSTSVSDRQI QVDTSKDASH LIEDLLKSTN SYQSQMLELD HQEGSFPAED VLELSSATAD LRQLSLHEET STKSIEGSSA VIIPNHLRVT NADCAHLSFG
401: SFGSGAFSGS FPSKQLKSNL EVPPVADDAS RIDDSDTRNH EYDNNGQLEP TLTENVVSRS GSGSENLDVP LVSQPEVVRN DPLDTAHVLQ YNFPSASDYA
501: LSSAAQPNAA AFSFPQGNTQ VQTLSPFSSL MQPNTLQNSI LASSIPHLRD FDLPLSPLLT TQAMPTRYST TVSSISGPTI STPEALNPGV FSNPQSTPQL
601: PSTTMLTSPA LPQHLPVHHY SQPALPLGHF ANMISYPFLP HSYTYLPSIQ QAFAANSPFH QSPAAVPSVG MKYSQPQFKS SLSATSLPQA SAIASAYGGL
701: GSSANIPGAF ILNHTTASAS TTIGFDEALS LQYKEGSHYL PLQQSENPAM WIHGAGSRTM SALPASTFYN YPGQNQHSGI RPSQQTSQLG ALGYPNLYHS
801: QAGPSREHQQ NPGEGNLNGS QTPSQPANQI WQHGY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.