Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 16.37 | 54.3 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 5.42 | 51.69 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 46.29 | 48.58 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 43.93 | 48.19 |
| KRH47571 | Soybean | nucleus | 45.82 | 45.08 |
| KRH06147 | Soybean | nucleus | 45.47 | 44.88 |
| Solyc12g049230.1.1 | Tomato | nucleus | 40.75 | 43.85 |
| AT3G13990.1 | Thale cress | nucleus | 40.05 | 40.09 |
| Os06t0206100-01 | Rice | nucleus | 39.69 | 39.46 |
| Zm00001d044979_P010 | Maize | nucleus | 39.22 | 39.08 |
| EER88029 | Sorghum | nucleus | 39.46 | 39.0 |
| Zm00001d037122_P009 | Maize | nucleus | 38.28 | 37.79 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 38.4 | 37.64 |
| CDY65326 | Canola | nucleus | 37.69 | 37.6 |
| CDX97535 | Canola | nucleus | 38.16 | 37.54 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 38.4 | 37.51 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 37.93 | 37.35 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 38.63 | 37.02 |
| Bra027380.1-P | Field mustard | nucleus | 38.16 | 35.92 |
| CDY33258 | Canola | nucleus | 36.75 | 35.82 |
| CDY39087 | Canola | nucleus | 36.63 | 35.62 |
| Bra021524.1-P | Field mustard | nucleus | 36.04 | 35.13 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 25.68 | 25.98 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 25.32 | 24.52 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 24.03 | 23.67 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 17.31 | 22.9 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 17.67 | 17.67 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 17.08 | 17.37 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 16.96 | 16.4 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 17.31 | 16.15 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P07830_001 | EnsemblPlants:GSMUA_Achr3T07830_001 | EnsemblPlantsGene:GSMUA_Achr3G07830_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI0002948D35 | UniProt:M0SCQ0 | MapMan:35.2 | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G07830_001]
Coordinates
chr3:-:5411554..5423165
Molecular Weight (calculated)
91388.7 Da
IEP (calculated)
7.110
GRAVY (calculated)
-0.615
Length
849 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMGSGVDGG GQVVPLRIQK TIQSIKEIVG NHSDADIYAV LKETNMDPNE TAQKLLNQDP FHEVKRKRDR KKEPTGYRGL ADTRRHVEPN VQWAKPLTSW
101: DQNMHKGDYT RNSVPRISRQ FRIVRDNRVN QNAKEDVKQE TLHQTSSYIH EKSTARDPSD EELSVASNLD GYLLSADSSK STDVSHNAKD AGPSGSQRPF
201: LHEDAKATVS SSKAQDLQSS SHAHSKVASG NSIIGVYSSS LDPVHVPSAD SRSAGIVGAI RRDIGAVGAQ RRSSDRQVSQ SSVSNLSSNP PLGKDVSPQT
301: EPSGHLNATS KSNHLNQGSA LVRNLPSTSM SRSVLSGQHH SKQHQQFMGN QKAMQTNMEW KPKSTQKPNI AIPGVVVSDS VSPSSADNLC ITKLVDATEL
401: SEKLSKASIS ENQHVIIPQH LQVPESERTC LTFGSFEAGF DSKGIITANQ QSQSSDDVSA SVPVVSTADV FAAGHKDTLV VQGRTPQSDY PALVSESEEL
501: PTATDDSRSS QNIGSYADIG LVQSSSPPYS SKEQQLQNPQ SLSSFSAYDN QNGYDVPFFR TVLEDNVHTQ DLTSASEALN SLASSFSPLS SNGITQQQQL
601: AHQPQQSLPQ MYPQVHIPHY PNFVPYRHIF SPVYVPPIAL PNYSSNPAYP HPSNGNNYLM MPGGSSQIPA ASMKYAAAQY KPVPGGSPTA YASYNNSAGF
701: TISPPGAVGS TAGPDDITRI KYKDHGLYMP NQQAETSDIW IQTQREHPSL QSAPYYNLSG QAPHAAFLPA HAGHGSFGPA AQISHVQYPG LYHPSQPASM
801: ASPHQLVHHN VAPAIGGGVG VGVAAPGPGP QVGTYQQPQV GHLNWTANF
101: DQNMHKGDYT RNSVPRISRQ FRIVRDNRVN QNAKEDVKQE TLHQTSSYIH EKSTARDPSD EELSVASNLD GYLLSADSSK STDVSHNAKD AGPSGSQRPF
201: LHEDAKATVS SSKAQDLQSS SHAHSKVASG NSIIGVYSSS LDPVHVPSAD SRSAGIVGAI RRDIGAVGAQ RRSSDRQVSQ SSVSNLSSNP PLGKDVSPQT
301: EPSGHLNATS KSNHLNQGSA LVRNLPSTSM SRSVLSGQHH SKQHQQFMGN QKAMQTNMEW KPKSTQKPNI AIPGVVVSDS VSPSSADNLC ITKLVDATEL
401: SEKLSKASIS ENQHVIIPQH LQVPESERTC LTFGSFEAGF DSKGIITANQ QSQSSDDVSA SVPVVSTADV FAAGHKDTLV VQGRTPQSDY PALVSESEEL
501: PTATDDSRSS QNIGSYADIG LVQSSSPPYS SKEQQLQNPQ SLSSFSAYDN QNGYDVPFFR TVLEDNVHTQ DLTSASEALN SLASSFSPLS SNGITQQQQL
601: AHQPQQSLPQ MYPQVHIPHY PNFVPYRHIF SPVYVPPIAL PNYSSNPAYP HPSNGNNYLM MPGGSSQIPA ASMKYAAAQY KPVPGGSPTA YASYNNSAGF
701: TISPPGAVGS TAGPDDITRI KYKDHGLYMP NQQAETSDIW IQTQREHPSL QSAPYYNLSG QAPHAAFLPA HAGHGSFGPA AQISHVQYPG LYHPSQPASM
801: ASPHQLVHHN VAPAIGGGVG VGVAAPGPGP QVGTYQQPQV GHLNWTANF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.