Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39087 | Canola | nucleus | 97.47 | 97.25 |
| Bra027380.1-P | Field mustard | nucleus | 78.99 | 76.27 |
| AT3G13990.1 | Thale cress | nucleus | 73.13 | 75.12 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 16.65 | 56.64 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 47.88 | 51.55 |
| KRH47571 | Soybean | nucleus | 48.22 | 48.67 |
| KRH06147 | Soybean | nucleus | 47.42 | 48.02 |
| Solyc12g049230.1.1 | Tomato | nucleus | 41.56 | 45.88 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 35.13 | 36.04 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 29.62 | 33.33 |
| EER88029 | Sorghum | nucleus | 30.31 | 30.73 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 30.42 | 30.6 |
| Os06t0206100-01 | Rice | nucleus | 29.97 | 30.56 |
| Zm00001d044979_P010 | Maize | nucleus | 29.62 | 30.28 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 29.97 | 30.03 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 29.62 | 29.93 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 30.2 | 29.68 |
| Zm00001d037122_P009 | Maize | nucleus | 28.93 | 29.3 |
| KXG39164 | Sorghum | nucleus | 24.68 | 27.42 |
| Os03t0411000-01 | Rice | nucleus | 24.23 | 27.37 |
| Zm00001d029487_P001 | Maize | nucleus | 22.73 | 26.83 |
| Bra040021.1-P | Field mustard | nucleus | 17.68 | 18.73 |
| Bra029667.1-P | Field mustard | nucleus | 17.34 | 18.28 |
| Bra039379.1-P | Field mustard | nucleus | 8.15 | 18.11 |
| Bra013287.1-P | Field mustard | nucleus | 15.5 | 17.31 |
| Bra021900.1-P | Field mustard | nucleus | 16.07 | 17.05 |
| Bra010832.1-P | Field mustard | nucleus | 16.07 | 17.03 |
| Bra022970.1-P | Field mustard | nucleus | 15.73 | 16.93 |
| Bra030134.1-P | Field mustard | nucleus | 14.7 | 16.37 |
| Bra038015.1-P | Field mustard | nucleus | 11.25 | 16.09 |
| Bra021022.1-P | Field mustard | nucleus | 11.37 | 15.94 |
| Bra032310.1-P | Field mustard | nucleus | 14.7 | 14.9 |
Protein Annotations
| EnsemblPlants:Bra021524.1 | EnsemblPlants:Bra021524.1-P | EnsemblPlantsGene:Bra021524 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI000254455A | UniProt:M4DYC8 | MapMan:35.2 | : | : |
Description
AT3G13990 (E=2e-276) | unknown protein
Coordinates
chrA01:+:24753773..24757851
Molecular Weight (calculated)
94703.8 Da
IEP (calculated)
7.536
GRAVY (calculated)
-0.862
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSESRTGGN RAMGPDDDEE ERKVIESIKE IVGNHSDADI YTALKESDMN ADEAVQKLIH QDPFHEVKRR KDRKKEDAVL VEPANVKKPL ESVTSEVKVR
101: TQPEHNVRRG GYSRNAFPGN AAPQDAFPRK PLESATSEVK VRTQSEHNVR RGGYSRNVFS RNAAPRNAFS RNPATGSKRE FRVVRDNRSN PNANEELKHS
201: TAQSPASNIS KVVTTEDKKG STGGLGNHHS SGAQGFTEDC KAAADVRPRD SEIAPLHRPT RKELNDGKET SRGVTLPLTD SVSSSTDPVH VPSPVSRSSP
301: VGAIKREVRG GGFGGKTSEV IGKDPSAGAL SKNGTPNAYR SSSPNSKKDQ VSQTTPRESV LPSGVEKNGP LLNRQRGNRG GQYARTQQVG GHTKGILQNK
401: EWKPKSIQKP VEHNPGVIGT PTKSQACRPA DNITNLESEA VKLQDKLSHV HISETQNVII ADHIRLPETD RCQLTFGSFV QEFSSSMNSE PAAFQESCSS
501: EELRESDRSL PVTSPETLAD GPGKPIDILD DHLRISESDS RVSVPSEQLL PEEKEAHRSD NLDEYSEMLK NSDTLVPFQQ AYGNHGSYDF PYFSQTIDEN
601: SRGQGLPSQQ EQASGTHMVN NAPPSTIPML QQQQQQQQGS MQQMYPQVHV SHFPSLMPYR QFVSPVYVPQ MPMPGYSGNP AAYAHPSSGN SYVLMPGGGS
701: HPGSNGAKYG IQQFKPVPGG PTGFGTYNSP NGYQINPPNV VGNAMGLEDP SRMKYKDGNI YVPNPQAETS EIWMQNPRDL SNLQSPPYYN VAGQTPHGAY
801: LPSHTPHPSF NAPAAATQSS QMQFQGLFHP PQPGTMANLH HMGPGLGGNV GVGVVPSPPS QLGHPSWASN F
101: TQPEHNVRRG GYSRNAFPGN AAPQDAFPRK PLESATSEVK VRTQSEHNVR RGGYSRNVFS RNAAPRNAFS RNPATGSKRE FRVVRDNRSN PNANEELKHS
201: TAQSPASNIS KVVTTEDKKG STGGLGNHHS SGAQGFTEDC KAAADVRPRD SEIAPLHRPT RKELNDGKET SRGVTLPLTD SVSSSTDPVH VPSPVSRSSP
301: VGAIKREVRG GGFGGKTSEV IGKDPSAGAL SKNGTPNAYR SSSPNSKKDQ VSQTTPRESV LPSGVEKNGP LLNRQRGNRG GQYARTQQVG GHTKGILQNK
401: EWKPKSIQKP VEHNPGVIGT PTKSQACRPA DNITNLESEA VKLQDKLSHV HISETQNVII ADHIRLPETD RCQLTFGSFV QEFSSSMNSE PAAFQESCSS
501: EELRESDRSL PVTSPETLAD GPGKPIDILD DHLRISESDS RVSVPSEQLL PEEKEAHRSD NLDEYSEMLK NSDTLVPFQQ AYGNHGSYDF PYFSQTIDEN
601: SRGQGLPSQQ EQASGTHMVN NAPPSTIPML QQQQQQQQGS MQQMYPQVHV SHFPSLMPYR QFVSPVYVPQ MPMPGYSGNP AAYAHPSSGN SYVLMPGGGS
701: HPGSNGAKYG IQQFKPVPGG PTGFGTYNSP NGYQINPPNV VGNAMGLEDP SRMKYKDGNI YVPNPQAETS EIWMQNPRDL SNLQSPPYYN VAGQTPHGAY
801: LPSHTPHPSF NAPAAATQSS QMQFQGLFHP PQPGTMANLH HMGPGLGGNV GVGVVPSPPS QLGHPSWASN F
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.