Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22126 | Canola | nucleus | 97.93 | 98.29 |
| Bra029667.1-P | Field mustard | nucleus | 81.02 | 80.63 |
| AT3G07660.1 | Thale cress | nucleus | 81.27 | 79.43 |
| KRH16977 | Soybean | nucleus | 50.49 | 47.27 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 50.85 | 46.65 |
| KRH72609 | Soybean | nucleus | 49.88 | 46.38 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 44.77 | 43.86 |
| Solyc07g045230.2.1 | Tomato | nucleus | 44.89 | 42.12 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 44.89 | 42.08 |
| Solyc05g018750.2.1 | Tomato | nucleus | 40.63 | 40.93 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 25.91 | 39.89 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 41.73 | 39.79 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 37.83 | 37.74 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 37.71 | 37.62 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 29.32 | 37.54 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 37.35 | 37.26 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 37.1 | 34.23 |
| KXG24955 | Sorghum | nucleus | 32.12 | 32.47 |
| Zm00001d050112_P011 | Maize | nucleus | 32.12 | 31.17 |
| Bra038015.1-P | Field mustard | nucleus | 18.49 | 24.96 |
| Bra039379.1-P | Field mustard | nucleus | 10.22 | 21.43 |
| Bra030134.1-P | Field mustard | nucleus | 18.49 | 19.44 |
| Bra013287.1-P | Field mustard | nucleus | 18.25 | 19.23 |
| Bra022970.1-P | Field mustard | nucleus | 18.86 | 19.16 |
| Bra021900.1-P | Field mustard | nucleus | 18.86 | 18.88 |
| Bra010832.1-P | Field mustard | nucleus | 18.73 | 18.73 |
| Bra027380.1-P | Field mustard | nucleus | 20.19 | 18.4 |
| Bra032310.1-P | Field mustard | nucleus | 18.86 | 18.04 |
| Bra021524.1-P | Field mustard | nucleus | 18.73 | 17.68 |
| Bra021022.1-P | Field mustard | nucleus | 13.02 | 17.23 |
Protein Annotations
| EnsemblPlants:Bra040021.1 | EnsemblPlants:Bra040021.1-P | EnsemblPlantsGene:Bra040021 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI0002544760 | UniProt:M4FFZ7 | MapMan:35.2 | : | : |
Description
AT3G07660 (E=0.0) | unknown protein
Coordinates
chrA01:+:27883799..27888410
Molecular Weight (calculated)
88018.6 Da
IEP (calculated)
6.891
GRAVY (calculated)
-0.751
Length
822 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGGGGGGGG ARVSIPAKTR KTIQTIKEIT AGNYSEEEIH AMLLECNMNP DEATQRLLLQ DPFLEVKKKR DKRKENLTNK DSVEPQWRSG GPGRGGRGGR
101: VNFSSRHSSH DGAGSKNSFR KENGPKQVTD PSASTSQETK TKDNAVSSHS AVMDKTSDVH HPSNRPARSG QGKATGSSVP SNSIESSKNR LALGVNEQKS
201: AGSLPLPRPS SSEVRFTPKS VGEQTVHEQH MGESKFHNRA RGVVKTAVND AYVPRPASSH SNSTGSRPSS NYSNRSHQTV AQRGKEWKPK PVNHNTTQGS
301: VASATTETLV VPTEASEKSV EDVVPSAEGT SRLERQLEDL QIQRQHVIIP NHILVPEAER TKFSFGSFDA GFSITSTSVA FPETEKISAP LSQNSPEVEE
401: RFEEEELSHP TVISTEKEED NNVYSESPSQ VPNDMAGEGI TATNAAPEYD VSKQENMLES ESNQNSFDHV PSNITGLAPP APGSQLPQFE NADPQARDAL
501: RIPNFVVQQP FDTASYYAQF YRPGLDSDGR VSPFAASKFN GNVTGLPPHS SQTMQEGGNN LVMSTASPTP LATQAAGLMQ SSLPVTQQPV PVFRPPGLHM
601: SHYPPNYMPY GHYFSPFYPP LPTMHPFLSN GAFPQQPQAS GVYHTPPPPG AAAPGGKYTL PHYKPGTNAG NLAHVGMPGG YGPSYGSFPA GYNPSSAASA
701: GNSNSNEDLS TLQLKENNGY NTTGQQSEAL PVWIAGPGRD VPSSFYGLQH HGQHVTYAPA QAGHVAFPGM YHPGQAVTAP GGVHHPLLQQ SQGGVAGGEM
801: VAPGPNVFQQ PQQTQMNWPS NY
101: VNFSSRHSSH DGAGSKNSFR KENGPKQVTD PSASTSQETK TKDNAVSSHS AVMDKTSDVH HPSNRPARSG QGKATGSSVP SNSIESSKNR LALGVNEQKS
201: AGSLPLPRPS SSEVRFTPKS VGEQTVHEQH MGESKFHNRA RGVVKTAVND AYVPRPASSH SNSTGSRPSS NYSNRSHQTV AQRGKEWKPK PVNHNTTQGS
301: VASATTETLV VPTEASEKSV EDVVPSAEGT SRLERQLEDL QIQRQHVIIP NHILVPEAER TKFSFGSFDA GFSITSTSVA FPETEKISAP LSQNSPEVEE
401: RFEEEELSHP TVISTEKEED NNVYSESPSQ VPNDMAGEGI TATNAAPEYD VSKQENMLES ESNQNSFDHV PSNITGLAPP APGSQLPQFE NADPQARDAL
501: RIPNFVVQQP FDTASYYAQF YRPGLDSDGR VSPFAASKFN GNVTGLPPHS SQTMQEGGNN LVMSTASPTP LATQAAGLMQ SSLPVTQQPV PVFRPPGLHM
601: SHYPPNYMPY GHYFSPFYPP LPTMHPFLSN GAFPQQPQAS GVYHTPPPPG AAAPGGKYTL PHYKPGTNAG NLAHVGMPGG YGPSYGSFPA GYNPSSAASA
701: GNSNSNEDLS TLQLKENNGY NTTGQQSEAL PVWIAGPGRD VPSSFYGLQH HGQHVTYAPA QAGHVAFPGM YHPGQAVTAP GGVHHPLLQQ SQGGVAGGEM
801: VAPGPNVFQQ PQQTQMNWPS NY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.