Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g045230.2.1 | Tomato | nucleus | 66.79 | 62.21 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 56.99 | 51.9 |
| Os09t0261400-01 | Rice | plasma membrane | 4.78 | 48.75 |
| KRH16977 | Soybean | nucleus | 52.45 | 48.75 |
| KRH72609 | Soybean | nucleus | 52.08 | 48.08 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 27.82 | 42.51 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 42.4 | 41.24 |
| CDY22126 | Canola | nucleus | 40.93 | 40.78 |
| Bra040021.1-P | Field mustard | nucleus | 40.93 | 40.63 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 43.01 | 40.02 |
| CDY35953 | Canola | nucleus | 39.71 | 39.75 |
| CDY28028 | Canola | nucleus | 39.34 | 39.73 |
| Bra029667.1-P | Field mustard | nucleus | 39.83 | 39.35 |
| AT3G07660.1 | Thale cress | nucleus | 40.44 | 39.24 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 39.34 | 38.96 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 39.09 | 38.71 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 38.97 | 38.59 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 39.34 | 37.24 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 39.09 | 35.8 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 27.08 | 34.42 |
| KXG24955 | Sorghum | nucleus | 32.97 | 33.09 |
| Zm00001d050112_P011 | Maize | nucleus | 33.21 | 32.0 |
| Solyc12g049230.1.1 | Tomato | nucleus | 23.53 | 24.33 |
| Solyc09g018250.2.1 | Tomato | plastid | 2.82 | 21.7 |
| Solyc02g071180.2.1 | Tomato | nucleus | 21.08 | 20.65 |
| Solyc03g005750.2.1 | Tomato | nucleus | 20.71 | 20.05 |
Protein Annotations
| EnsemblPlants:Solyc05g018750.2.1 | EnsemblPlantsGene:Solyc05g018750.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| UniParc:UPI0002767409 | UniProt:K4BZC9 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5:+:23528108..23541786
Molecular Weight (calculated)
86389.2 Da
IEP (calculated)
6.681
GRAVY (calculated)
-0.629
Length
816 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNNSGVGG GGARVSIPST VKKTIHNIKE ITGNHSDDEI YAMLKECSMD PNETAQKLLY QDTFHEVKRK HDRRRENLNK ESAEPTWKPA MQGRGNKGSR
101: GNFTPRHVLL DVGGGRNSRP DKENGASHVS GKSVNPSSVP TVEGKNTSSS SSARAIRPGV VAFGSNNVVP NAHASAGRGI KQSEATAGAG SIKSEEPLQS
201: ASHDANRSPR VSVGTRDMLG QKMPNFSNSS TSLSSPPSSG AYFSASDPVL LPSHDSRPLG AVGTIRREVG SQRAPFENFP TNSNGSKTAT AGPGMEWKPK
301: PTNNSIAQIS VSSAAGSSDV STVSTEVDTQ PQPPGVDVET REGTLELQQK LEKSHISDIQ YVIIPNHLHV PEVEKLGFCF GSFEASLSLR ISTNSAAESE
401: KTLSLSGTSE DIEETINDQL SSDQNPSAAA EGANCSDQSP PSGGQENLSA KTEDVSSSIP EYSESKQGTL QGGHQYSVVH TSPNYSFGFV PPTLGSQLAP
501: FEISESQSRD VSRLPNFVVQ QPIDPTSYYA QYYRSSVDGD GRISPFHSAG VSTKYNGNVA VVPPQTSQEG GNAPTSLATQ AAGIMQCSAA VTQQSLPVFR
601: QATGMHLPHY PPNYIPYAHY FSPYYVPPTA IHQFLSNGAF PQQPQAGSVY PPPPAAAPRY SPSQYRSGAN VGNSTHNGVP GTYGPYGSST SNYTPVSTTG
701: GGNPASNEDP SASSFKDSQQ QSEGSGVWIT PGRDLSSLQA SSFFNLPQGQ VAFTPTQPGH GIIAGLYHPA QPVTAQTVHP LMQQSQTMSG PIDMVGPTAT
801: VYQQPHHSQI NWPSSY
101: GNFTPRHVLL DVGGGRNSRP DKENGASHVS GKSVNPSSVP TVEGKNTSSS SSARAIRPGV VAFGSNNVVP NAHASAGRGI KQSEATAGAG SIKSEEPLQS
201: ASHDANRSPR VSVGTRDMLG QKMPNFSNSS TSLSSPPSSG AYFSASDPVL LPSHDSRPLG AVGTIRREVG SQRAPFENFP TNSNGSKTAT AGPGMEWKPK
301: PTNNSIAQIS VSSAAGSSDV STVSTEVDTQ PQPPGVDVET REGTLELQQK LEKSHISDIQ YVIIPNHLHV PEVEKLGFCF GSFEASLSLR ISTNSAAESE
401: KTLSLSGTSE DIEETINDQL SSDQNPSAAA EGANCSDQSP PSGGQENLSA KTEDVSSSIP EYSESKQGTL QGGHQYSVVH TSPNYSFGFV PPTLGSQLAP
501: FEISESQSRD VSRLPNFVVQ QPIDPTSYYA QYYRSSVDGD GRISPFHSAG VSTKYNGNVA VVPPQTSQEG GNAPTSLATQ AAGIMQCSAA VTQQSLPVFR
601: QATGMHLPHY PPNYIPYAHY FSPYYVPPTA IHQFLSNGAF PQQPQAGSVY PPPPAAAPRY SPSQYRSGAN VGNSTHNGVP GTYGPYGSST SNYTPVSTTG
701: GGNPASNEDP SASSFKDSQQ QSEGSGVWIT PGRDLSSLQA SSFFNLPQGQ VAFTPTQPGH GIIAGLYHPA QPVTAQTVHP LMQQSQTMSG PIDMVGPTAT
801: VYQQPHHSQI NWPSSY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.