Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16977 | Soybean | nucleus | 60.94 | 62.19 |
| KRH72609 | Soybean | nucleus | 60.49 | 61.31 |
| Solyc05g018750.2.1 | Tomato | nucleus | 51.9 | 56.99 |
| Solyc07g045230.2.1 | Tomato | nucleus | 55.25 | 56.51 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 47.88 | 51.13 |
| Bra040021.1-P | Field mustard | nucleus | 46.65 | 50.85 |
| CDY22126 | Canola | nucleus | 46.32 | 50.67 |
| CDY35953 | Canola | nucleus | 45.98 | 50.55 |
| AT3G07660.1 | Thale cress | nucleus | 47.21 | 50.3 |
| CDY28028 | Canola | nucleus | 45.2 | 50.12 |
| Bra029667.1-P | Field mustard | nucleus | 45.98 | 49.88 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 48.44 | 49.49 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 46.32 | 48.14 |
| Os09t0261400-01 | Rice | plasma membrane | 4.24 | 47.5 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 41.52 | 47.33 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 27.68 | 46.44 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 39.96 | 43.45 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 39.84 | 43.33 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 39.84 | 43.33 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 30.92 | 43.15 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 39.84 | 40.07 |
| KXG24955 | Sorghum | nucleus | 36.27 | 39.98 |
| Zm00001d050112_P011 | Maize | nucleus | 35.49 | 37.54 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 8.15 | 28.52 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 6.58 | 27.83 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 24.55 | 27.19 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 23.33 | 24.0 |
Protein Annotations
| EntrezGene:100245992 | wikigene:100245992 | MapMan:35.1 | ProteinID:CBI28470 | ProteinID:CBI28470.3 | UniProt:D7TD97 |
| EMBL:FN595759 | InterPro:GIP1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | EntrezGene:LOC100245992 | wikigene:LOC100245992 | PFAM:PF06972 | PANTHER:PTHR12758 |
| PANTHER:PTHR12758:SF13 | SUPFAM:SSF46934 | InterPro:UBA-like_sf | UniParc:UPI00019846AA | ArrayExpress:VIT_12s0057g01290 | EnsemblPlantsGene:VIT_12s0057g01290 |
| EnsemblPlants:VIT_12s0057g01290.t01 | RefSeq:XP_002267265 | RefSeq:XP_002267265.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr12:+:10034693..10046747
Molecular Weight (calculated)
94365.5 Da
IEP (calculated)
6.332
GRAVY (calculated)
-0.584
Length
896 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGFRVSI SSSMREVIQN IKEVTGDHTE EEIYAMLKDC AMDPNETVQK LLMQDPFHEV RRKRDKRKEH LSNRDSAEPR WRPGMQGQGS RGGRVNYSSR
101: HTSHDTGGGR NSAPAKENGI SQISEKGIAQ PTSQEMKNKE TTAIASSITV MADGPAVTTT GNTSVVHTSH STVASDVIHA DLSASTDANK LGNSPSPSID
201: ANKNPSIAFG TGDTCGQPTP GSSNCSASVT PASSSGGYFS ASDPVLVPSH DSRISHAVGT IKREVGSQRT PVENNEITHA ESRSAAVAAS ETGSSFLQGK
301: MPGKSPGVGK NHLVESSQPS PSLTHAGSSV NRPSSNYNTR LQQVIGPQKV GPGMEWKPKS TNPNLVQSSG AAVTSEIPSV SAESVTQTQP VSGDLDSEEA
401: NPKPQKKLEG LHSRARRHVI IPNHIHVPEA ERTGLNFGSF TTGFGVSLID AYDPESDKTS TPQSETSQGI EETVEEHSSS NQNVLATAEE GDYPDHPESP
501: PHVSENISSG EGDISSSSAP EYDSKQEIAL PPGGHQYSTV HTSPNYSFGF VPPILGSQLA PFESSESQAR DVTRLPSFVV QPQFDPASYY AQFYRSGSDS
601: DGRISPFQSP GVVPKYNGNV AVLSPQTSQS PQEGGNSLVL STAGATPLVT QSAGVMQSSI AVTQQPVPVF RQPGVHIPHY PPNYIPYGHY FSPFYVPPPA
701: IHQFLANGAF PHQPQAGGVY PAPPNAAAAG VKYSLPQYKP GTNTGNSAHM GMPGGYGPYG SSPAGYNPSS AAAAGNSTAN EEIAASQFKE NSVYITGQQS
801: EGSAVWIAAP GRDISGLPAS SFYNLPPQSQ HVAFTPTQGG HGPIAGIYHP AQAVTATVHP LLQQSQTMAG AVDMVGPTGS VYQQPQHAQI NWPNNY
101: HTSHDTGGGR NSAPAKENGI SQISEKGIAQ PTSQEMKNKE TTAIASSITV MADGPAVTTT GNTSVVHTSH STVASDVIHA DLSASTDANK LGNSPSPSID
201: ANKNPSIAFG TGDTCGQPTP GSSNCSASVT PASSSGGYFS ASDPVLVPSH DSRISHAVGT IKREVGSQRT PVENNEITHA ESRSAAVAAS ETGSSFLQGK
301: MPGKSPGVGK NHLVESSQPS PSLTHAGSSV NRPSSNYNTR LQQVIGPQKV GPGMEWKPKS TNPNLVQSSG AAVTSEIPSV SAESVTQTQP VSGDLDSEEA
401: NPKPQKKLEG LHSRARRHVI IPNHIHVPEA ERTGLNFGSF TTGFGVSLID AYDPESDKTS TPQSETSQGI EETVEEHSSS NQNVLATAEE GDYPDHPESP
501: PHVSENISSG EGDISSSSAP EYDSKQEIAL PPGGHQYSTV HTSPNYSFGF VPPILGSQLA PFESSESQAR DVTRLPSFVV QPQFDPASYY AQFYRSGSDS
601: DGRISPFQSP GVVPKYNGNV AVLSPQTSQS PQEGGNSLVL STAGATPLVT QSAGVMQSSI AVTQQPVPVF RQPGVHIPHY PPNYIPYGHY FSPFYVPPPA
701: IHQFLANGAF PHQPQAGGVY PAPPNAAAAG VKYSLPQYKP GTNTGNSAHM GMPGGYGPYG SSPAGYNPSS AAAAGNSTAN EEIAASQFKE NSVYITGQQS
801: EGSAVWIAAP GRDISGLPAS SFYNLPPQSQ HVAFTPTQGG HGPIAGIYHP AQAVTATVHP LLQQSQTMAG AVDMVGPTGS VYQQPQHAQI NWPNNY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.