Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- extracellular 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g018250.2.1 | Tomato | plastid | 31.13 | 62.26 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 19.34 | 26.8 |
| Zm00001d017358_P001 | Maize | nucleus | 13.21 | 25.45 |
| Zm00001d035703_P001 | Maize | nucleus | 30.19 | 23.7 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 55.19 | 13.43 |
| PGSC0003DMT400007972 | Potato | nucleus | 49.53 | 12.56 |
| Solyc02g071180.2.1 | Tomato | nucleus | 48.58 | 12.36 |
| KRH42968 | Soybean | nucleus | 48.58 | 12.31 |
| KRH59101 | Soybean | nucleus | 47.64 | 11.95 |
| Zm00001d004950_P001 | Maize | nucleus | 17.45 | 11.94 |
| Solyc03g005750.2.1 | Tomato | nucleus | 46.7 | 11.74 |
| KRH11725 | Soybean | nucleus | 44.34 | 11.19 |
| CDX99817 | Canola | nucleus | 32.55 | 11.13 |
| KRH36716 | Soybean | nucleus | 43.4 | 10.98 |
| CDY61561 | Canola | cytosol | 3.3 | 10.61 |
| CDY61562 | Canola | nucleus | 37.74 | 10.5 |
| CDY43334 | Canola | nucleus | 40.57 | 10.46 |
| CDX90188 | Canola | nucleus | 40.57 | 10.46 |
| CDX78828 | Canola | nucleus | 34.43 | 10.46 |
| Bra010832.1-P | Field mustard | nucleus | 40.09 | 10.34 |
| AT1G29350.1 | Thale cress | nucleus | 40.09 | 10.23 |
| AT1G29370.1 | Thale cress | nucleus | 39.62 | 10.11 |
| CDY61669 | Canola | nucleus | 34.91 | 10.0 |
| Bra021900.1-P | Field mustard | nucleus | 38.68 | 9.99 |
| Bra022970.1-P | Field mustard | nucleus | 37.74 | 9.89 |
| CDX84653 | Canola | nucleus | 37.74 | 9.84 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 38.68 | 9.82 |
| CDY43685 | Canola | nucleus | 38.21 | 9.76 |
| Bra013287.1-P | Field mustard | nucleus | 35.85 | 9.74 |
| CDY48333 | Canola | nucleus | 37.74 | 9.72 |
| KXG33052 | Sorghum | nucleus | 37.26 | 9.6 |
| CDY15632 | Canola | nucleus | 35.38 | 9.54 |
| Bra030134.1-P | Field mustard | nucleus | 34.91 | 9.46 |
| AT4G18150.1 | Thale cress | nucleus | 33.49 | 9.37 |
| CDX94662 | Canola | nucleus | 35.38 | 9.32 |
| Zm00001d011517_P002 | Maize | nucleus | 36.79 | 9.29 |
| Zm00001d043962_P001 | Maize | nucleus | 36.79 | 9.26 |
| Os01t0663800-01 | Rice | plasma membrane | 36.79 | 9.17 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 34.91 | 9.09 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 38.68 | 9.01 |
| Bra032310.1-P | Field mustard | nucleus | 36.32 | 8.96 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 35.38 | 8.88 |
| KRH38470 | Soybean | endoplasmic reticulum | 3.3 | 8.86 |
| CDY11787 | Canola | nucleus | 30.66 | 8.82 |
| Zm00001d039138_P012 | Maize | nucleus | 34.43 | 8.81 |
| Os05t0566900-01 | Rice | extracellular | 35.38 | 8.8 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 34.91 | 8.78 |
| KXG22612 | Sorghum | nucleus | 34.43 | 8.77 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 36.32 | 8.77 |
| KXG22544 | Sorghum | nucleus | 35.38 | 8.76 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 35.85 | 8.74 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 34.91 | 8.72 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 10.38 | 8.59 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 34.43 | 8.57 |
| Os05t0581800-01 | Rice | nucleus | 34.43 | 8.57 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 33.96 | 8.52 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 34.43 | 8.42 |
| Zm00001d009591_P006 | Maize | nucleus | 33.96 | 8.4 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 34.43 | 8.39 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 34.43 | 8.36 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 33.02 | 8.12 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 32.55 | 8.09 |
| Zm00001d009683_P004 | Maize | nucleus | 31.6 | 7.87 |
| CDY08888 | Canola | nucleus | 21.23 | 7.8 |
| Zm00001d039041_P007 | Maize | nucleus | 32.55 | 7.65 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 33.96 | 7.6 |
| CDX76544 | Canola | nucleus | 20.28 | 7.56 |
| Bra021022.1-P | Field mustard | nucleus | 20.28 | 6.92 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 24.53 | 6.62 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 27.83 | 6.58 |
| AT5G46380.2 | Thale cress | nucleus | 18.4 | 5.89 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 22.17 | 5.81 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 3.77 | 3.57 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 10.85 | 3.43 |
Protein Annotations
| ArrayExpress:VIT_19s0014g03260 | EMBL:FN595229 | EnsemblPlants:VIT_19s0014g03260.t01 | EnsemblPlantsGene:VIT_19s0014g03260 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 |
| ProteinID:CCB46368 | ProteinID:CCB46368.1 | UniParc:UPI000210A354 | UniProt:F6H272 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr19:+:3386639..3387609
Molecular Weight (calculated)
23677.7 Da
IEP (calculated)
9.566
GRAVY (calculated)
-0.624
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYNQLNRDV SGHQLKQHGR RIVDIAFAQD AIDKYQTREA AAAIQGKMVG TQQRVFLCRY TESFDKAVRE GVALSILFSF KDVQFPETIK SGGILMGSFH
101: VVGVYKNGNH LISFQQQNEN STMWNHGPGS QTMSAVPANT YYSFQGQNQQ PGGFRQGHQP SQHFGVLGYP NFHHSQAGIS LEHQQQNPRD GSLSGSQGQA
201: CKQSQQIWIY RA
101: VVGVYKNGNH LISFQQQNEN STMWNHGPGS QTMSAVPANT YYSFQGQNQQ PGGFRQGHQP SQHFGVLGYP NFHHSQAGIS LEHQQQNPRD GSLSGSQGQA
201: CKQSQQIWIY RA
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.