CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039138_P012	Maize	nucleus	90.38	90.71
Zm00001d009683_P004	Maize	nucleus	88.58	86.6
TraesCS1A01G420300.1	Wheat	nucleus	63.7	62.72
Os05t0581800-01	Rice	nucleus	63.82	62.32
TraesCS1D01G428100.1	Wheat	nucleus	63.22	61.74
HORVU1Hr1G091730.18	Barley	mitochondrion	59.98	57.89
TraesCS1B01G450700.1	Wheat	nucleus	58.29	56.86
KRH38470	Soybean	endoplasmic reticulum	5.29	55.7
CDY61561	Canola	cytosol	3.85	48.48
Solyc09g018250.2.1	Tomato	plastid	4.93	38.68
GSMUA_Achr7P25510_001	Banana	nucleus	37.02	36.89
KXG33052	Sorghum	nucleus	34.98	35.36
GSMUA_Achr4P14940_001	Banana	nucleus	36.06	35.34
VIT_19s0014g03260.t01	Wine grape	nucleus	8.77	34.43
VIT_10s0003g02740.t01	Wine grape	nucleus	34.98	33.41
GSMUA_Achr4P07880_001	Banana	nucleus	36.18	33.08
GSMUA_Achr3P31170_001	Banana	nucleus	34.5	32.69
KRH42968	Soybean	nucleus	32.81	32.62
Solyc02g071180.2.1	Tomato	nucleus	32.57	32.53
PGSC0003DMT400007972	Potato	nucleus	32.33	32.18
KXG22544	Sorghum	nucleus	33.05	32.13
Solyc03g005750.2.1	Tomato	nucleus	32.09	31.67
KRH59101	Soybean	nucleus	32.09	31.6
CDY43334	Canola	nucleus	30.53	30.9
KRH11725	Soybean	nucleus	30.89	30.6
AT1G29370.1	Thale cress	nucleus	30.53	30.57
KRH36716	Soybean	nucleus	30.77	30.55
CDY15632	Canola	nucleus	28.85	30.53
CDY48333	Canola	nucleus	30.17	30.5
AT1G29350.1	Thale cress	nucleus	30.17	30.2
Bra030134.1-P	Field mustard	nucleus	28.37	30.18
Bra021900.1-P	Field mustard	nucleus	29.57	29.96
CDX90188	Canola	nucleus	29.57	29.93
Bra010832.1-P	Field mustard	nucleus	29.33	29.68
CDY43685	Canola	nucleus	29.45	29.52
CDX94662	Canola	nucleus	28.37	29.32
CDY61669	Canola	nucleus	25.72	28.92
Bra032310.1-P	Field mustard	nucleus	29.81	28.87
CDX99817	Canola	nucleus	21.03	28.23
CDX78828	Canola	nucleus	23.68	28.22
Bra013287.1-P	Field mustard	nucleus	26.44	28.21
Bra022970.1-P	Field mustard	nucleus	27.4	28.18
CDX84653	Canola	nucleus	27.52	28.17
AT4G18150.1	Thale cress	nucleus	24.76	27.18
CDY61562	Canola	nucleus	24.88	27.17
CDY37665	Canola	cytosol, nucleus, plastid	20.43	25.37
CDY08888	Canola	nucleus	16.35	23.57
CDX76544	Canola	nucleus	15.99	23.37
Bra021022.1-P	Field mustard	nucleus	16.35	21.9
AT5G46380.2	Thale cress	nucleus	17.31	21.75
CDY11787	Canola	nucleus	15.62	17.64
KXG24955	Sorghum	nucleus	15.02	15.38
EER88029	Sorghum	nucleus	14.9	14.44
KXG39164	Sorghum	nucleus	9.86	10.46

Protein Annotations

EnsemblPlants:KXG22612	EnsemblPlantsGene:SORBI_3009G245800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GIP1
InterPro:UBA-like_sf	PANTHER:PTHR12758	PANTHER:PTHR12758:SF25	PFAM:PF06972	ProteinID:KXG22612	ProteinID:KXG22612.2
SEG:seg	SUPFAM:SSF46934	unigene:Sbi.8379	UniParc:UPI000B425755	UniProt:A0A1B6PAB5	MapMan:35.2

Description

hypothetical protein

Coordinates

chr9:+:58145966..58155902

Molecular Weight (calculated)

88027.4 Da

IEP (calculated)

4.631

GRAVY (calculated)

-0.569

Length

832 amino acids

Sequence
(BLAST)

001: MRGGGRGGGG RQPSYAAPDG SDAAAIPAAS RKMVQSLKGI LADRSEGEIY ATLCDCGMDP DIAVERLISQ DTFHEVRRKR DKKKETKVNQ DTRPRPFQKS
101: IYRGYKAGSD RSGRDSGGFK GPVKKEPELH APLNSSALDV KTSDTTETFS ATGNVAQADA KNTTSQPPSQ VQHGWGGIPG RPSMAEIVKM GRPQAKVGSR
201: SIASSTAMPA IGDSAISNIP NLAPNEYNRT VFASEVGHGA ADILPNGAVE VHSVPKDASS LDMLPSAEGT DVEAPSMSAN AQGSSTPDAN EDDIEKDANL
301: EEGNTESLTT QGQVSASGKD TQSEYTEVVS HLDEGSIEKT DDFQLNGLSF EHNQSLNGDM STTTTQFDHL TLHEGPKLTD DNPAVIIPDH LQVSNADCAH
401: LTFGSFVSGT LDASLATKPL DSHGDVATVP DDDSIDQSDG RIHDDESKVT LAPPANEYTT PANEYVTSAA NSNVENLDIT SAQQSERANF LDVTSNTEYN
501: LSSTPDYATS GPALQDSASQ SYLQENRQFQ NISPLSSFMQ IQNGLLPPAI PPLREFDPAF SLLLTNPPMM PGAMSSSMSN ATVSTQPQEN ANPVGLPNPQ
601: LTQSQPSTSI ASGPPLPQHL LHPYAQATLP LGYASMIGYP SLPPSYAYLP PAAFQQPYMN SGLFHQAAAA VPNSSVKYPL PQYKSNIALA SLPQPGSLLS
701: SYVGGFGTAN NMPGNFPLNQ STTSATTTLG FDGTVPSHFK DGNQFISLQQ NENPAMWMHG AGSRGMPPLA ASTMYGYQGQ SHQAGLRQGQ LPSQFGSALG
801: QSQPGLGPEH RNPSDSNLSG AAQANQMWPN SY

Best Arabidopsis Sequence Match ( AT1G29370.1 )
(BLAST)

001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y

Arabidopsis Description

RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.