Skip to main content
crop-pal logo
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G29350.1 Thale cress nucleus 98.68 98.68
CDY15632 Canola nucleus 75.45 79.77
CDY43334 Canola nucleus 78.58 79.44
Bra030134.1-P Field mustard nucleus 74.73 79.41
CDX90188 Canola nucleus 78.1 78.95
Bra010832.1-P Field mustard nucleus 77.98 78.83
CDX94662 Canola nucleus 76.17 78.63
CDY48333 Canola nucleus 77.74 78.49
CDX99817 Canola nucleus 57.76 77.42
Bra032310.1-P Field mustard nucleus 77.62 75.09
KRH38470 Soybean endoplasmic reticulum 5.66 59.49
Solyc09g018250.2.1 Tomato plastid 7.1 55.66
CDY11787 Canola nucleus 46.21 52.1
KRH36716 Soybean nucleus 49.58 49.16
KRH11725 Soybean nucleus 49.46 48.93
KRH42968 Soybean nucleus 49.1 48.75
KRH59101 Soybean nucleus 49.34 48.52
VIT_10s0003g02740.t01 Wine grape nucleus 50.3 47.99
Solyc02g071180.2.1 Tomato nucleus 46.45 46.34
PGSC0003DMT400007972 Potato nucleus 46.21 45.93
Solyc03g005750.2.1 Tomato nucleus 44.52 43.89
Zm00001d035703_P001 Maize nucleus 14.2 43.7
Zm00001d017358_P001 Maize nucleus 5.66 42.73
AT4G18150.1 Thale cress nucleus 36.22 39.71
VIT_19s0014g03260.t01 Wine grape nucleus 10.11 39.62
GSMUA_Achr7P25510_001 Banana nucleus 37.06 36.89
GSMUA_Achr3P31170_001 Banana nucleus 38.03 35.99
TraesCS1A01G403900.1 Wheat nucleus 36.58 35.06
KXG33052 Sorghum nucleus 34.66 34.99
GSMUA_Achr4P14940_001 Banana nucleus 35.74 34.98
Os05t0566900-01 Rice extracellular 35.86 34.98
TraesCS1D01G411700.1 Wheat nucleus 36.58 34.94
TraesCS1B01G433400.1 Wheat nucleus 36.7 34.94
Zm00001d035814_P001 Maize cytosol, mitochondrion, nucleus, plastid, vacuole 6.38 34.64
GSMUA_Achr4P07880_001 Banana nucleus 37.67 34.4
Zm00001d011517_P002 Maize nucleus 34.3 33.93
KXG22544 Sorghum nucleus 34.9 33.88
Zm00001d043962_P001 Maize nucleus 33.94 33.49
Os01t0663800-01 Rice plasma membrane 33.94 33.14
TraesCS3B01G269500.1 Wheat nucleus 33.69 33.14
HORVU3Hr1G060080.3 Barley cytosol, nucleus, vacuole 34.18 32.64
TraesCS3D01G241600.2 Wheat nucleus 33.09 32.62
TraesCS3A01G241400.3 Wheat nucleus 31.89 32.56
Zm00001d009591_P006 Maize nucleus 33.33 32.32
HORVU1Hr1G089280.1 Barley nucleus 36.46 32.0
Zm00001d039041_P007 Maize nucleus 34.3 31.6
Zm00001d039138_P012 Maize nucleus 31.05 31.12
KXG22612 Sorghum nucleus 30.57 30.53
Zm00001d004950_P001 Maize nucleus 11.19 30.0
TraesCS1A01G420300.1 Wheat nucleus 30.2 29.7
TraesCS1D01G428100.1 Wheat nucleus 30.08 29.34
Zm00001d009683_P004 Maize nucleus 28.88 28.2
Zm00001d015193_P001 Maize nucleus, plastid 7.58 28.12
Os05t0581800-01 Rice nucleus 28.28 27.58
HORVU1Hr1G091730.18 Barley mitochondrion 28.4 27.38
TraesCS1B01G450700.1 Wheat nucleus 26.96 26.26
AT5G46380.2 Thale cress nucleus 19.74 24.77
AT3G13222.1 Thale cress nucleus 14.92 21.87
AT3G07660.1 Thale cress nucleus 20.58 20.33
AT1G55820.1 Thale cress nucleus 13.0 18.78
AT3G13990.1 Thale cress nucleus 16.13 15.8
Protein Annotations
MapMan:35.2EntrezGene:839812UniProt:A0A178WAI2ProteinID:AEE31077.1ArrayExpress:AT1G29370EnsemblPlantsGene:AT1G29370
RefSeq:AT1G29370TAIR:AT1G29370RefSeq:AT1G29370-TAIR-GEnsemblPlants:AT1G29370.1TAIR:AT1G29370.1EMBL:AY063854
EMBL:AY096680Unigene:At.22870InterPro:GIP1GO:GO:0003674GO:GO:0005488GO:GO:0005515
RefSeq:NP_174230.2ProteinID:OAP15094.1PFAM:PF06972PO:PO:0000293PANTHER:PTHR12758PANTHER:PTHR12758:SF20
UniProt:Q8VZT4SUPFAM:SSF46934InterPro:UBA-like_sfUniParc:UPI00000A32FASEG:seg:
Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
Coordinates
chr1:-:10277890..10283225
Molecular Weight (calculated)
90893.2 Da
IEP (calculated)
6.057
GRAVY (calculated)
-0.986
Length
831 amino acids
Sequence
(BLAST)
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.