Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72379 | Canola | cytosol, nucleus, plastid | 17.04 | 74.24 |
| CDY53764 | Canola | extracellular, vacuole | 52.17 | 69.12 |
| Bra038015.1-P | Field mustard | nucleus | 66.26 | 62.56 |
| CDY53767 | Canola | nucleus | 61.91 | 57.89 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 7.13 | 46.07 |
| AT3G13222.1 | Thale cress | nucleus | 32.87 | 33.33 |
| Os09t0261400-01 | Rice | plasma membrane | 4.52 | 32.5 |
| AT3G07660.1 | Thale cress | nucleus | 29.04 | 19.86 |
| AT1G29350.1 | Thale cress | nucleus | 18.78 | 13.0 |
| AT1G29370.1 | Thale cress | nucleus | 18.78 | 13.0 |
| AT3G13990.1 | Thale cress | nucleus | 18.96 | 12.85 |
| AT4G18150.1 | Thale cress | nucleus | 16.7 | 12.66 |
| AT5G46380.2 | Thale cress | nucleus | 13.39 | 11.63 |
Protein Annotations
| MapMan:35.1 | EntrezGene:842032 | UniProt:A4FVR1 | ProteinID:AAF79311.1 | ProteinID:AAF79498.1 | ProteinID:AEE33303.1 |
| ArrayExpress:AT1G55820 | EnsemblPlantsGene:AT1G55820 | RefSeq:AT1G55820 | TAIR:AT1G55820 | RefSeq:AT1G55820-TAIR-G | EnsemblPlants:AT1G55820.1 |
| TAIR:AT1G55820.1 | Unigene:At.49980 | EMBL:BT030359 | InterPro:GIP1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 |
| RefSeq:NP_175978.2 | PFAM:PF06972 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF30 | SUPFAM:SSF46934 |
| InterPro:UBA-like_sf | UniParc:UPI0000F581E8 | SEG:seg | : | : | : |
Description
GIP1LGBF-interacting protein 1-like [Source:UniProtKB/Swiss-Prot;Acc:A4FVR1]
Coordinates
chr1:+:20864339..20867761
Molecular Weight (calculated)
61880.1 Da
IEP (calculated)
6.359
GRAVY (calculated)
-0.682
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSDGGSSR VSIPYHLRKT LQKIREYTGK QHSDEDIFAV YKDSFNDPHE TAQKLLFLDT FHEVRSKREK KKEPIVPVTQ PSGRGGRRNF ASSNSYQGSG
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.