Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0261400-01 | Rice | plasma membrane | 43.82 | 48.75 |
| Bra039379.1-P | Field mustard | nucleus | 47.19 | 10.71 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 73.03 | 7.75 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 75.28 | 7.64 |
| CDY24202 | Canola | nucleus | 48.31 | 7.62 |
| AT3G13222.1 | Thale cress | nucleus | 47.19 | 7.41 |
| CDY43361 | Canola | nucleus | 47.19 | 7.25 |
| AT1G55820.1 | Thale cress | nucleus | 46.07 | 7.13 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 66.29 | 6.84 |
| CDY53767 | Canola | nucleus | 43.82 | 6.34 |
| Bra038015.1-P | Field mustard | nucleus | 42.7 | 6.24 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 51.69 | 5.42 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 47.19 | 5.03 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 48.31 | 4.9 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 43.82 | 4.59 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 46.07 | 4.51 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 15.73 | 2.18 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 16.85 | 1.94 |
| CDY53764 | Canola | extracellular, vacuole | 3.37 | 0.69 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P09430_001 | EnsemblPlants:GSMUA_Achr1T09430_001 | EnsemblPlantsGene:GSMUA_Achr1G09430_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SUPFAM:SSF46934 |
| UniParc:UPI000295AA85 | UniProt:M0RYF2 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G09430_001]
Coordinates
chr1:-:7255554..7256703
Molecular Weight (calculated)
10292.3 Da
IEP (calculated)
8.513
GRAVY (calculated)
-0.593
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MNGGGARVSI PPSVRRTIQN IKEIAGHHTD EDIYSMLKEC AMDPNETAQK LLLQDTFHEV KRKRDKRNGV NWIYFVFVLN LDNLQITNH
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.