Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P12040_001 | Banana | nucleus | 74.59 | 73.32 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 65.55 | 67.34 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 6.84 | 66.29 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 36.54 | 49.07 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 30.05 | 48.5 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 48.14 | 46.32 |
| KRH72609 | Soybean | nucleus | 47.33 | 46.15 |
| KRH16977 | Soybean | nucleus | 46.87 | 46.01 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 42.81 | 44.78 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 42.69 | 44.66 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 42.58 | 44.54 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 38.63 | 42.37 |
| Solyc07g045230.2.1 | Tomato | nucleus | 43.04 | 42.35 |
| CDY22126 | Canola | nucleus | 39.79 | 41.88 |
| Bra040021.1-P | Field mustard | nucleus | 39.79 | 41.73 |
| AT3G07660.1 | Thale cress | nucleus | 40.37 | 41.38 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 42.58 | 41.19 |
| CDY35953 | Canola | nucleus | 38.86 | 41.1 |
| CDY28028 | Canola | nucleus | 38.52 | 41.09 |
| Bra029667.1-P | Field mustard | nucleus | 38.63 | 40.31 |
| KXG24955 | Sorghum | nucleus | 37.7 | 39.98 |
| Solyc05g018750.2.1 | Tomato | nucleus | 37.24 | 39.34 |
| Zm00001d050112_P011 | Maize | nucleus | 37.24 | 37.9 |
| KRH73929 | Soybean | nucleus | 32.25 | 36.39 |
| KRH14203 | Soybean | nucleus | 32.48 | 36.22 |
| PGSC0003DMT400057353 | Potato | nucleus | 26.68 | 29.6 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 23.67 | 24.03 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 19.14 | 21.32 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 19.72 | 20.36 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 19.72 | 20.02 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 19.84 | 19.48 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 20.19 | 19.12 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P19270_001 | EnsemblPlants:GSMUA_Achr1T19270_001 | EnsemblPlantsGene:GSMUA_Achr1G19270_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI000294B76B | UniProt:M0S185 | MapMan:35.2 | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G19270_001]
Coordinates
chr1:+:14411756..14428739
Molecular Weight (calculated)
91634.0 Da
IEP (calculated)
6.210
GRAVY (calculated)
-0.546
Length
862 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGSRVSI PAGVRRTIQN IKEIAGNHSD EEIYAMLKDC GMDPNETAQK LLLQGILSPL PSSKRDKRKE NVRDPNDARW RPGVQGRGGR GGRGKLNYSS
101: HSLPNDVAGR NVTSGRENGL NQDHPLSSQG SHVSGASGIA PWEENSGAVT TKSGTSGINS SDVIYGSASG QSVLGSDHSA ENRTAAPVFE VSTSISDLKL
201: VTSPVTCGTA ELRTTKQVTG IQHSLIETAT HESASRDISG RNFLNISGKG SSDMSNADTH GKKIQIKPQG SKTNELSEKS VSSFSSVINS RQSSTYNNRP
301: HLSGSQKAPV PNKEWKPKSV QVNPAQASEM TDTSDILVMA EAVSQSLPAS CSVTSEETTM KLEKKLDELK LSDRQHVIIP NHLQVPESER HGLSFGSFDE
401: NFELNMVFAN GPTRDKIDTP PSESSQEVKE TSEQPSLSIH MATSAGQEAE FMGHPQSPEL VLDSYPTKEA SDSASISTAV ENDQCKQEAS LAPDGSQNLV
501: VQSAPSYPSL GLDTQVLGSQ FAPFESSEPQ ACDTSHLPNF LVQQSYDPST SYYTPFYRPV ADADGRISPL LASSASSRYN GNTTVLPART VQASQENTNS
601: VVLPMVGSTP LATQAAAPMQ GSVAIPQQPV PIFRQPPGLH ISHYPPNYIQ YSQYFSPFYV PPPTLHHFLS GAAFPQQPPT GNIYPTPGAA SPVAAVKYTL
701: PQYKPGANTG NSTIVGLQSV YGTYNATPAG YASGPAASSG NSTSNEDLGS SQFKENNVYI PGQQQSEGSA VWIPAPGRDI SALQASSFYN IPSQGQHMTF
801: APTQAGHGAF SGVYPPTPTV SAPVHPLLQQ SQTLAGAVEM LGPSGGVYQQ PQRAQMNWTN NY
101: HSLPNDVAGR NVTSGRENGL NQDHPLSSQG SHVSGASGIA PWEENSGAVT TKSGTSGINS SDVIYGSASG QSVLGSDHSA ENRTAAPVFE VSTSISDLKL
201: VTSPVTCGTA ELRTTKQVTG IQHSLIETAT HESASRDISG RNFLNISGKG SSDMSNADTH GKKIQIKPQG SKTNELSEKS VSSFSSVINS RQSSTYNNRP
301: HLSGSQKAPV PNKEWKPKSV QVNPAQASEM TDTSDILVMA EAVSQSLPAS CSVTSEETTM KLEKKLDELK LSDRQHVIIP NHLQVPESER HGLSFGSFDE
401: NFELNMVFAN GPTRDKIDTP PSESSQEVKE TSEQPSLSIH MATSAGQEAE FMGHPQSPEL VLDSYPTKEA SDSASISTAV ENDQCKQEAS LAPDGSQNLV
501: VQSAPSYPSL GLDTQVLGSQ FAPFESSEPQ ACDTSHLPNF LVQQSYDPST SYYTPFYRPV ADADGRISPL LASSASSRYN GNTTVLPART VQASQENTNS
601: VVLPMVGSTP LATQAAAPMQ GSVAIPQQPV PIFRQPPGLH ISHYPPNYIQ YSQYFSPFYV PPPTLHHFLS GAAFPQQPPT GNIYPTPGAA SPVAAVKYTL
701: PQYKPGANTG NSTIVGLQSV YGTYNATPAG YASGPAASSG NSTSNEDLGS SQFKENNVYI PGQQQSEGSA VWIPAPGRDI SALQASSFYN IPSQGQHMTF
801: APTQAGHGAF SGVYPPTPTV SAPVHPLLQQ SQTLAGAVEM LGPSGGVYQQ PQRAQMNWTN NY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.