Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P09430_001 | Banana | cytosol | 7.75 | 73.03 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 73.9 | 70.7 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 67.34 | 65.55 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 32.42 | 50.94 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 37.54 | 49.07 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 47.8 | 48.66 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 47.44 | 48.3 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 47.32 | 48.18 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 51.13 | 47.88 |
| KRH16977 | Soybean | nucleus | 48.99 | 46.81 |
| KRH72609 | Soybean | nucleus | 48.99 | 46.49 |
| Bra040021.1-P | Field mustard | nucleus | 43.86 | 44.77 |
| CDY22126 | Canola | nucleus | 43.62 | 44.69 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 47.32 | 44.56 |
| AT3G07660.1 | Thale cress | nucleus | 44.34 | 44.23 |
| CDY28028 | Canola | nucleus | 41.95 | 43.56 |
| Solyc07g045230.2.1 | Tomato | nucleus | 45.17 | 43.26 |
| CDY35953 | Canola | nucleus | 41.84 | 43.07 |
| KXG24955 | Sorghum | nucleus | 41.48 | 42.8 |
| Bra029667.1-P | Field mustard | nucleus | 41.84 | 42.49 |
| Solyc05g018750.2.1 | Tomato | nucleus | 41.24 | 42.4 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 38.74 | 41.35 |
| Zm00001d050112_P011 | Maize | nucleus | 40.17 | 39.79 |
| KRH14203 | Soybean | nucleus | 33.25 | 36.09 |
| KRH73929 | Soybean | nucleus | 32.3 | 35.47 |
| PGSC0003DMT400057353 | Potato | nucleus | 29.8 | 32.17 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 25.98 | 25.68 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 20.74 | 22.48 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 21.22 | 20.97 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 20.38 | 20.48 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 20.62 | 19.7 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 21.1 | 19.45 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P06080_001 | EnsemblPlants:GSMUA_Achr7T06080_001 | EnsemblPlantsGene:GSMUA_Achr7G06080_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI000294A84C | UniProt:M0TF48 | MapMan:35.2 | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G06080_001]
Coordinates
chr7:+:4498391..4513754
Molecular Weight (calculated)
89209.2 Da
IEP (calculated)
6.158
GRAVY (calculated)
-0.568
Length
839 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGDGSRVSI PAGVRPTIQN IKEIAGNHSD EEIYAMLKEC GMDPNETAQK LLLQDPFHEV KRKRDRRKEN VREPADPRWR AGLQGRGGRG GRGNYSSRPV
101: LNAAAGRNLT SGKVNGVNQG SDKGIPSSSS NTPDTEVKSA NSILSAPTGG HSIPDSDKIS SNKAAAPVSE VYVPTSDPLL APSLDAHNPA ELENIKRITG
201: IQHSVVETAT SHAGSQHISG SNLSYMSGKC SSMSSPYMHG KVPMKPHESG SNELSEKSQV APSFSTATGS RPSSTYSNRS QQLSGLQKAP VPNKEWKPKS
301: TPVIASQASE MTETPDVPLA AEAVAASLPA PCSVASEVTT LMLEKKLEEL KLSDRKHVII PNHLQVSESE RHGLSFGSFD PNFELNMGFA NGPAKDRIDT
401: PVSDSSQETE ETTEQPSLST HTTSSAAQDD FINHPQSPEQ VSDNYSSNEA GIPSSISAAA EYDQSQKEAA LVPEGLQNSV VQSAPSYPSL GLVPQVLGNQ
501: LGQFESSEHQ AQDTSRFPSF LVQQTYDPST SYYTPFYRPT ADSDGRISPF LAPGASMYNR NIAVLPSQTG QASNESTNVA MLSTAGSTPL ATQAAGTMQG
601: SVAIPQQPVP VFRQPAGLHI SHYPPNYIPY NQYFSPFYVP PPTLHHFLSS PAFPQQPPTG SMFPTPGSAN PATPVKYSLP QYKPGANIGN STIVGMPAGY
701: GMYNSTPAGY TPDAATSGNS TANDDLGSSQ FKENNLCIPG QQSESLSVWI PAPGRDISTL QASSYYSIPQ GQHMTYAPTQ AGHGAFSGVY HPPPTVPASS
801: VHPLLQQSQT VAGAVEMVGP PAGVYQQPQH AQINWTNNY
101: LNAAAGRNLT SGKVNGVNQG SDKGIPSSSS NTPDTEVKSA NSILSAPTGG HSIPDSDKIS SNKAAAPVSE VYVPTSDPLL APSLDAHNPA ELENIKRITG
201: IQHSVVETAT SHAGSQHISG SNLSYMSGKC SSMSSPYMHG KVPMKPHESG SNELSEKSQV APSFSTATGS RPSSTYSNRS QQLSGLQKAP VPNKEWKPKS
301: TPVIASQASE MTETPDVPLA AEAVAASLPA PCSVASEVTT LMLEKKLEEL KLSDRKHVII PNHLQVSESE RHGLSFGSFD PNFELNMGFA NGPAKDRIDT
401: PVSDSSQETE ETTEQPSLST HTTSSAAQDD FINHPQSPEQ VSDNYSSNEA GIPSSISAAA EYDQSQKEAA LVPEGLQNSV VQSAPSYPSL GLVPQVLGNQ
501: LGQFESSEHQ AQDTSRFPSF LVQQTYDPST SYYTPFYRPT ADSDGRISPF LAPGASMYNR NIAVLPSQTG QASNESTNVA MLSTAGSTPL ATQAAGTMQG
601: SVAIPQQPVP VFRQPAGLHI SHYPPNYIPY NQYFSPFYVP PPTLHHFLSS PAFPQQPPTG SMFPTPGSAN PATPVKYSLP QYKPGANIGN STIVGMPAGY
701: GMYNSTPAGY TPDAATSGNS TANDDLGSSQ FKENNLCIPG QQSESLSVWI PAPGRDISTL QASSYYSIPQ GQHMTYAPTQ AGHGAFSGVY HPPPTVPASS
801: VHPLLQQSQT VAGAVEMVGP PAGVYQQPQH AQINWTNNY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.