Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P04410_001 | |
| GSMUA_Achr7P21160_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | GSMUA_Achr1P04410_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_Achr7P21160_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_AchrUn_... | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 85.98 | 86.3 |
| KRH75298 | Soybean | cytosol, nucleus | 28.78 | 78.79 |
| KRH13261 | Soybean | cytosol | 35.06 | 76.61 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 69.37 | 72.59 |
| EES01849 | Sorghum | nucleus | 70.11 | 72.52 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 71.59 | 72.12 |
| KRH40033 | Soybean | nucleus | 69.37 | 69.12 |
| KRH23771 | Soybean | nucleus | 69.0 | 68.75 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 66.05 | 68.32 |
| Zm00001d042641_P001 | Maize | nucleus | 70.48 | 64.75 |
| PGSC0003DMT400008944 | Potato | nucleus | 62.36 | 64.02 |
| Os01t0876800-00 | Rice | nucleus | 70.85 | 64.0 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 61.62 | 63.98 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 69.37 | 63.51 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 69.37 | 63.51 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 69.37 | 63.3 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 68.27 | 54.41 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 29.15 | 52.32 |
| CDY69197 | Canola | nucleus | 42.07 | 50.67 |
| Bra024547.1-P | Field mustard | nucleus | 42.8 | 48.54 |
| CDX73279 | Canola | cytosol | 43.17 | 48.35 |
| CDY04769 | Canola | nucleus | 42.07 | 48.1 |
| AT1G33470.1 | Thale cress | cytosol | 43.17 | 47.76 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.31 | 46.54 |
| KRH62942 | Soybean | mitochondrion | 34.69 | 46.08 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 29.89 | 45.76 |
| Bra012350.1-P | Field mustard | nucleus | 41.33 | 44.98 |
| CDY25759 | Canola | nucleus | 40.96 | 44.58 |
| Os01t0958500-01 | Rice | nucleus | 48.34 | 42.26 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 43.17 | 40.34 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 44.65 | 38.78 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 44.28 | 38.46 |
| Bra010203.1-P | Field mustard | nucleus | 43.17 | 38.36 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 44.28 | 38.34 |
| EES02078 | Sorghum | nucleus | 47.6 | 38.17 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 43.91 | 37.66 |
| Zm00001d042042_P001 | Maize | nucleus | 46.49 | 37.06 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 32.1 | 36.86 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.73 | 35.68 |
| AT1G22910.3 | Thale cress | nucleus | 45.39 | 35.45 |
| CDY67263 | Canola | nucleus | 42.07 | 34.76 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 11.81 | 34.41 |
| GSMUA_Achr11P... | Banana | nucleus | 33.58 | 34.34 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 33.21 | 34.09 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 33.21 | 32.26 |
| CDY13339 | Canola | mitochondrion | 18.82 | 30.36 |
| CDY21399 | Canola | mitochondrion | 13.65 | 25.52 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 61.62 | 25.04 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 11.07 | 20.41 |
| GSMUA_Achr10P... | Banana | nucleus | 17.34 | 20.35 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 13.28 | 19.89 |
| GSMUA_Achr10P... | Banana | nucleus | 22.51 | 18.32 |
| GSMUA_Achr10P... | Banana | nucleus | 16.24 | 17.74 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 21.4 | 17.21 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 20.66 | 16.72 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 19.93 | 15.93 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 22.51 | 15.72 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 21.4 | 15.59 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 21.4 | 15.3 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 12.92 | 15.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.45 | 15.2 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 18.45 | 14.79 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 21.4 | 13.3 |
| GSMUA_Achr10P... | Banana | nucleus | 21.4 | 13.18 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 17.34 | 13.09 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 20.3 | 12.44 |
| GSMUA_Achr10P... | Banana | nucleus | 19.56 | 11.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.08 | 11.42 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 19.56 | 11.37 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 17.71 | 11.06 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 17.71 | 10.86 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 19.93 | 10.8 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 12.92 | 10.64 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 16.97 | 10.41 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 19.56 | 7.81 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 11.44 | 7.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P10930_001 | EnsemblPlants:GSMUA_Achr10T10930_001 | EnsemblPlantsGene:GSMUA_Achr10G10930_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000294ACBF | UniProt:M0RH69 | MapMan:35.1 | : |
Description
Putative RNA-binding protein 38 [Source:GMGC_GENE;Acc:GSMUA_Achr10G10930_001]
Coordinates
chr10:-:20582442..20585406
Molecular Weight (calculated)
28485.5 Da
IEP (calculated)
9.168
GRAVY (calculated)
-0.178
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPANVAGQF GDTTYTKVFV GGLAWETQRD TMRKYFEQFG EILEAVVITD KNTGRSKGYG FVTFREPEAA MRACVDPSPV IDGRRANCNL ASLGVHRSKP
101: PTLLHGGSRN FRVMKSFQAG LQGGVGTAFP SPAAATFPHY AIQQGLPYYV YGFSPYSAEY NYATSYYNMY GGAASQYPLY GGAANGVVAG TTGYYPYFQF
201: GQGGGGGGGG GGAAAYAQGQ GYGLQYPPML QYSAVTTTAG VTGFAAQLYG GPMSLAPTPT AQAVSFALKQ A
101: PTLLHGGSRN FRVMKSFQAG LQGGVGTAFP SPAAATFPHY AIQQGLPYYV YGFSPYSAEY NYATSYYNMY GGAASQYPLY GGAANGVVAG TTGYYPYFQF
201: GQGGGGGGGG GGAAAYAQGQ GYGLQYPPML QYSAVTTTAG VTGFAAQLYG GPMSLAPTPT AQAVSFALKQ A
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.