Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G258200.1 | |
| TraesCS1B01G268700.1 | |
| TraesCS1D01G257500.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | TraesCS1A01G258200.1 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | TraesCS1B01G268700.1 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | TraesCS1D01G257500.2 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 94.55 | 94.55 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 95.51 | 94.3 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 93.27 | 92.97 |
| KRH75298 | Soybean | cytosol, nucleus | 22.12 | 69.7 |
| Os01t0958500-01 | Rice | nucleus | 66.67 | 67.1 |
| KRH13261 | Soybean | cytosol | 24.36 | 61.29 |
| EES02078 | Sorghum | nucleus | 60.58 | 55.92 |
| Zm00001d042042_P001 | Maize | nucleus | 59.62 | 54.71 |
| KRH40033 | Soybean | nucleus | 40.71 | 46.69 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 40.06 | 46.47 |
| KRH23771 | Soybean | nucleus | 40.06 | 45.96 |
| PGSC0003DMT400008944 | Potato | nucleus | 38.78 | 45.83 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 38.14 | 45.42 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 37.82 | 45.21 |
| Bra024547.1-P | Field mustard | nucleus | 34.62 | 45.19 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 38.78 | 44.81 |
| CDY04769 | Canola | nucleus | 33.97 | 44.73 |
| CDY69197 | Canola | nucleus | 32.05 | 44.44 |
| GSMUA_Achr10P... | Banana | nucleus | 38.46 | 44.28 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 36.54 | 44.02 |
| CDX73279 | Canola | cytosol | 33.33 | 42.98 |
| AT1G33470.1 | Thale cress | cytosol | 33.65 | 42.86 |
| Bra012350.1-P | Field mustard | nucleus | 33.97 | 42.57 |
| CDY25759 | Canola | nucleus | 33.65 | 42.17 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 37.82 | 39.86 |
| KRH62942 | Soybean | mitochondrion | 25.0 | 38.24 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 32.69 | 35.79 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 30.77 | 35.16 |
| Bra010203.1-P | Field mustard | nucleus | 33.65 | 34.43 |
| TraesCS6B01G306600.1 | Wheat | plastid | 31.09 | 34.04 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 32.05 | 33.44 |
| CDY67263 | Canola | nucleus | 34.62 | 32.93 |
| AT1G22910.3 | Thale cress | nucleus | 35.26 | 31.7 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 28.85 | 30.0 |
| TraesCS6B01G348100.1 | Wheat | plastid | 26.92 | 27.01 |
| CDY13339 | Canola | mitochondrion | 14.1 | 26.19 |
| CDY21399 | Canola | mitochondrion | 11.54 | 24.83 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 37.18 | 17.39 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 18.27 | 13.77 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 16.67 | 13.76 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 16.35 | 13.67 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 15.71 | 13.42 |
| TraesCS3B01G250700.1 | Wheat | golgi | 18.91 | 13.41 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 14.74 | 12.92 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 15.38 | 12.87 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 17.95 | 12.39 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 17.95 | 11.89 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 17.31 | 10.61 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 13.46 | 9.27 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 10.26 | 9.12 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G562300.3 | EnsemblPlantsGene:TraesCS3B01G562300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:795377937..795383188
Molecular Weight (calculated)
32631.7 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.097
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMAHQAAAA GGDTRLTKLF VGGLAWETSK EGVRGHFERF GEILEAVVIA DKGTGRSKGY GFVTFREAEA AMRACLDPYP VIDGRRANCN LACLGVQRSK
101: APQTLPYLQP YAAVGHVHGG GNINTRAVKA AIAAAAGGGA SFVDHGIQQG VPAAAYNMYG YSPYFSDYSY QPLTYYQAYG GLAGGAQYQV FNGGATTAPT
201: AGLAMADPTG LYPYYQYAPA VSAAAAYNMM QYPQMYQYAA VGAPPESSPT AVSGLHQFIG AAAFEPHTGS QAGGMTLAQL TAPALPAPAP QYQYRLVSPM
301: PIATPDQKKP LA
101: APQTLPYLQP YAAVGHVHGG GNINTRAVKA AIAAAAGGGA SFVDHGIQQG VPAAAYNMYG YSPYFSDYSY QPLTYYQAYG GLAGGAQYQV FNGGATTAPT
201: AGLAMADPTG LYPYYQYAPA VSAAAAYNMM QYPQMYQYAA VGAPPESSPT AVSGLHQFIG AAAFEPHTGS QAGGMTLAQL TAPALPAPAP QYQYRLVSPM
301: PIATPDQKKP LA
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.