Factsheet for Solyc11g044470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g078300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33470.1	Solyc10g078300.1.1	AT3G56680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008944	Potato	nucleus	95.4	94.32
KRH75298	Soybean	cytosol, nucleus	31.03	81.82
KRH13261	Soybean	cytosol	37.16	78.23
VIT_18s0089g00920.t01	Wine grape	nucleus	75.86	73.61
KRH40033	Soybean	nucleus	75.1	72.06
KRH23771	Soybean	nucleus	75.1	72.06
EES01849	Sorghum	nucleus	62.84	62.6
GSMUA_Achr10P...	Banana	nucleus	63.98	61.62
GSMUA_Achr3P21850_001	Banana	nucleus	60.54	60.31
GSMUA_Achr8P08440_001	Banana	nucleus	59.0	59.46
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	61.3	59.26
Zm00001d042641_P001	Maize	nucleus	63.22	55.93
TraesCS3B01G419200.1	Wheat	nucleus	62.84	55.41
TraesCS3D01G380100.1	Wheat	nucleus	62.84	55.41
Os01t0876800-00	Rice	nucleus	63.6	55.33
TraesCS3A01G389600.1	Wheat	nucleus	62.84	55.22
CDY69197	Canola	nucleus	47.51	55.11
CDY04769	Canola	nucleus	47.89	52.74
Bra024547.1-P	Field mustard	nucleus	48.28	52.72
Bra012350.1-P	Field mustard	nucleus	47.89	50.2
CDY25759	Canola	nucleus	47.51	49.8
CDX73279	Canola	cytosol	45.21	48.76
AT1G33470.1	Thale cress	cytosol	45.21	48.16
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	62.07	47.65
KRH62942	Soybean	mitochondrion	35.63	45.59
Os01t0958500-01	Rice	nucleus	48.28	40.65
Solyc04g049920.2.1	Tomato	nucleus	37.16	40.25
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	36.78	39.83
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	46.74	39.1
Bra010203.1-P	Field mustard	nucleus	45.21	38.69
CDY67263	Canola	nucleus	48.28	38.41
AT1G22910.3	Thale cress	nucleus	50.96	38.33
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	45.59	38.02
TraesCS3B01G562300.3	Wheat	mitochondrion	45.21	37.82
TraesCS3D01G505900.1	Wheat	mitochondrion	45.59	37.66
EES02078	Sorghum	nucleus	48.66	37.57
Zm00001d042042_P001	Maize	nucleus	47.51	36.47
Solyc02g082270.2.1	Tomato	nucleus	37.16	34.4
Solyc04g074310.2.1	Tomato	nucleus	36.78	32.76
CDY21399	Canola	mitochondrion	17.24	31.03
CDY13339	Canola	mitochondrion	19.16	29.76
GSMUA_Achr6P24180_001	Banana	cytosol	56.7	22.19
Solyc03g121710.2.1	Tomato	nucleus	19.16	18.59
Solyc04g077520.2.1	Tomato	nucleus	21.07	16.13
Solyc07g045240.2.1	Tomato	nucleus	21.07	16.04
Solyc03g005680.2.1	Tomato	nucleus	25.67	15.69
Solyc06g062740.1.1	Tomato	cytosol	11.49	15.23
Solyc09g090520.2.1	Tomato	nucleus	26.82	14.74
Solyc02g090910.2.1	Tomato	nucleus	20.31	14.1
Solyc12g014210.1.1	Tomato	nucleus	17.62	13.73
Solyc09g072790.2.1	Tomato	nucleus	20.69	13.71
Solyc02g021560.2.1	Tomato	nucleus	22.61	13.69
Solyc02g093340.2.1	Tomato	nucleus	20.31	13.62
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	18.39	12.94
Solyc06g062730.1.1	Tomato	nucleus	17.24	12.26
Solyc10g081330.1.1	Tomato	nucleus	19.54	12.23
Solyc07g048030.2.1	Tomato	nucleus	18.39	10.98
Solyc04g011560.2.1	Tomato	nucleus	19.54	10.85
Solyc04g014820.2.1	Tomato	cytosol	11.11	10.82
Solyc12g006180.1.1	Tomato	nucleus	18.01	10.73
Solyc01g008970.2.1	Tomato	nucleus	15.33	10.64
Solyc11g012470.1.1	Tomato	nucleus	16.86	10.28
Solyc02g064540.1.1	Tomato	nucleus	14.18	10.0
Solyc12g014600.1.1	Tomato	nucleus	16.09	9.61
Solyc10g006050.2.1	Tomato	nucleus	15.33	9.24

Protein Annotations

EnsemblPlants:Solyc11g044470.1.1	EnsemblPlantsGene:Solyc11g044470.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44374	PANTHER:PTHR44374:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000276A44C	UniProt:K4D8B5	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr11:-:32625075..32630404

Molecular Weight (calculated)

27732.3 Da

IEP (calculated)

8.505

GRAVY (calculated)

-0.259

Length

261 amino acids

Sequence
(BLAST)

001: MTPSAQFGDT TYTKVFVGGL AWETQKETMK KYFEQFGDIL EAVVITDKAT GRSKGYGFVT FREAEAAMRA CVDAAPVIDG RRANCNLASM GVQRSKPTTP
101: KHGGGRNLRV MSGFHGGFQT ATAFPSATTF PHYAIQQGIP YNLYGYSPYS PDYTYPTTGY YSVYGGGNSQ YGVYGSAATA SGVLSSAAAA FYPYMNFGEG
201: NGNGCYTPSQ GYGVQYPHHL FPYSAAAAAA GPGYPTQHYG TPISLAPSPA LHSVCFAVPQ A

Best Arabidopsis Sequence Match ( AT1G33470.1 )
(BLAST)

001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.