Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072501 | Potato | nucleus | 89.21 | 90.29 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 43.17 | 39.39 |
| Solyc01g008970.2.1 | Tomato | nucleus | 32.61 | 36.17 |
| Solyc04g011560.2.1 | Tomato | nucleus | 34.77 | 30.85 |
| Solyc12g014210.1.1 | Tomato | nucleus | 23.74 | 29.55 |
| Solyc02g021560.2.1 | Tomato | nucleus | 29.02 | 28.07 |
| Solyc03g121710.2.1 | Tomato | nucleus | 13.19 | 20.45 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 11.75 | 20.33 |
| Solyc06g062740.1.1 | Tomato | cytosol | 9.35 | 19.8 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 12.23 | 19.54 |
| Solyc02g082270.2.1 | Tomato | nucleus | 12.95 | 19.15 |
| Solyc04g049920.2.1 | Tomato | nucleus | 10.79 | 18.67 |
| Solyc07g045240.2.1 | Tomato | nucleus | 15.11 | 18.37 |
| Solyc04g014820.2.1 | Tomato | cytosol | 11.27 | 17.54 |
| Solyc02g093340.2.1 | Tomato | nucleus | 15.59 | 16.71 |
| Solyc04g077520.2.1 | Tomato | nucleus | 13.19 | 16.13 |
| Solyc04g074310.2.1 | Tomato | nucleus | 11.27 | 16.04 |
| Solyc06g062730.1.1 | Tomato | nucleus | 12.95 | 14.71 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 12.95 | 14.56 |
| Solyc10g006050.2.1 | Tomato | nucleus | 14.87 | 14.32 |
| Solyc07g048030.2.1 | Tomato | nucleus | 14.87 | 14.19 |
| Solyc09g072790.2.1 | Tomato | nucleus | 13.19 | 13.96 |
| Solyc12g014600.1.1 | Tomato | nucleus | 14.39 | 13.73 |
| Solyc02g090910.2.1 | Tomato | nucleus | 12.23 | 13.56 |
| Solyc11g012470.1.1 | Tomato | nucleus | 13.91 | 13.55 |
| Solyc02g064540.1.1 | Tomato | nucleus | 11.75 | 13.24 |
| Solyc12g006180.1.1 | Tomato | nucleus | 13.91 | 13.24 |
| Solyc03g005680.2.1 | Tomato | nucleus | 13.43 | 13.11 |
| Solyc09g090520.2.1 | Tomato | nucleus | 14.87 | 13.05 |
Protein Annotations
| EnsemblPlants:Solyc10g081330.1.1 | EnsemblPlantsGene:Solyc10g081330.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44578 | PANTHER:PTHR44578:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00027698D7 | UniProt:K4D320 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr10:-:62427641..62430089
Molecular Weight (calculated)
44613.2 Da
IEP (calculated)
4.645
GRAVY (calculated)
-0.463
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTKRKSSSS TSRPQPEEPK PEIQPQSSSE EEEEELEEVE YEEDPEESES DLDFGSDGED EETKRCTIRK LLEPFSKDQI IQQFKTAASK DPSILSRLTS
101: FADSDPTHRK IFVHGLGYDA TSEQLLDAFK PYGKIEECKL ITDKVTGRAK GYGFVVFETR VGATRALKEP QKKIGNRTTS CQLAALRPAG TGQDSGGRKI
201: YVGNVGQDVD GEKLRAFFAK FGEIEEGPSG IDSVSGKFKG FAIFVYKSVE GANKALEEPQ KLFDGCQLFC KKFVENLNNA GSSNANQGVQ QNEMSYGFGV
301: TPGILSGASM NALPLLIGQN MGFGINPLLA PGFNPLFGGI GAGYGISGIS PIVIANFGSD PALQGLGPYQ GLQMWQPSFG GSAAMATRTT PADDSSGAGG
401: VTYPSSLGHD RAALGYV
101: FADSDPTHRK IFVHGLGYDA TSEQLLDAFK PYGKIEECKL ITDKVTGRAK GYGFVVFETR VGATRALKEP QKKIGNRTTS CQLAALRPAG TGQDSGGRKI
201: YVGNVGQDVD GEKLRAFFAK FGEIEEGPSG IDSVSGKFKG FAIFVYKSVE GANKALEEPQ KLFDGCQLFC KKFVENLNNA GSSNANQGVQ QNEMSYGFGV
301: TPGILSGASM NALPLLIGQN MGFGINPLLA PGFNPLFGGI GAGYGISGIS PIVIANFGSD PALQGLGPYQ GLQMWQPSFG GSAAMATRTT PADDSSGAGG
401: VTYPSSLGHD RAALGYV
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.