Factsheet for Solyc02g021560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008213	Potato	nucleus	93.97	95.52
KRH71299	Soybean	nucleus	46.87	52.6
KRH50169	Soybean	nucleus	46.64	52.34
GSMUA_Achr5P09550_001	Banana	nucleus	44.78	51.88
GSMUA_Achr5P09540_001	Banana	nucleus	42.92	47.68
Solyc12g014210.1.1	Tomato	nucleus	35.73	45.97
Os01t0614500-01	Rice	nucleus	47.33	45.64
TraesCS3A01G220400.1	Wheat	nucleus	45.24	44.32
EES03272	Sorghum	nucleus	45.71	44.27
Zm00001d011336_P002	Maize	nucleus	45.94	44.2
TraesCS3B01G250700.1	Wheat	golgi	45.01	44.09
Zm00001d044469_P003	Maize	nucleus	45.71	44.07
HORVU3Hr1G053990.1	Barley	nucleus	45.01	43.99
TraesCS3D01G232300.1	Wheat	nucleus	44.55	43.64
Solyc01g008970.2.1	Tomato	nucleus	26.91	30.85
Solyc10g081330.1.1	Tomato	nucleus	28.07	29.02
Solyc04g011560.2.1	Tomato	nucleus	28.31	25.96
Solyc03g121710.2.1	Tomato	nucleus	15.55	24.91
Solyc06g062740.1.1	Tomato	cytosol	11.37	24.87
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	13.69	24.48
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	13.69	22.61
Solyc04g049920.2.1	Tomato	nucleus	12.3	21.99
Solyc02g082270.2.1	Tomato	nucleus	14.39	21.99
Solyc07g045240.2.1	Tomato	nucleus	17.4	21.87
Solyc04g074310.2.1	Tomato	nucleus	14.39	21.16
Solyc04g077520.2.1	Tomato	nucleus	15.78	19.94
Solyc06g062730.1.1	Tomato	nucleus	16.94	19.89
Solyc02g093340.2.1	Tomato	nucleus	17.87	19.79
Solyc09g072790.2.1	Tomato	nucleus	16.94	18.53
Solyc09g090520.2.1	Tomato	nucleus	20.19	18.32
Solyc03g005680.2.1	Tomato	nucleus	17.87	18.03
Solyc04g014820.2.1	Tomato	cytosol	11.14	17.91
Solyc02g090910.2.1	Tomato	nucleus	14.85	17.02
Solyc12g006180.1.1	Tomato	nucleus	17.17	16.89
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	13.69	15.9
Solyc11g012470.1.1	Tomato	nucleus	15.78	15.89
Solyc07g048030.2.1	Tomato	nucleus	16.01	15.79
Solyc02g064540.1.1	Tomato	nucleus	12.99	15.14
Solyc12g014600.1.1	Tomato	nucleus	15.31	15.1
Solyc10g006050.2.1	Tomato	nucleus	14.85	14.78

Protein Annotations

EnsemblPlants:Solyc02g021560.2.1	EnsemblPlantsGene:Solyc02g021560.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002768829	UniProt:K4B504	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2:-:23198446..23200842

Molecular Weight (calculated)

44659.7 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.317

Length

431 amino acids

Sequence
(BLAST)

001: MDLSKKRKTD ENGGAYPVKT ELVTTAAAPP ALAVLSPEDI DKILETFTKD QCVSILRNAA LRYPDVLEGL RAVADADVSN RKLFVRGLGW ETTTDKLRQV
101: FSEFGELDEA VVITDKASSR SKGYGFVTFK HVDAAILSLK VPNKIIDGRV TVTQLAAAGN SGNSQSSDVA LRKIYVGNVP FEISSEKLLN HFSMYGEIEE
201: GPLGFDKQTG KAKGFAFFVY KTEDGARASL VDPVKTVEGH QVLCKLATDN KKGKPQNMGH GGAPGMNAGL VGMPGDDRVG SMPGSNYGVP VSGMGPYSGF
301: SGGPGPGMQQ PPPQPGMVAH QNPHLNSAIG GPGYGNQGPG SFTGGAGGYA GAGGYAGAGG YGGNSGDYGG YRMPQSSAGM PSSGGFPDGG SYALQSAYPT
401: QVPQPGAGSR VPPGGMYQGM CLESFLDATC F

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.