Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03272 | Sorghum | nucleus | 92.62 | 93.03 |
| Zm00001d011336_P002 | Maize | nucleus | 91.5 | 91.29 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 82.55 | 83.67 |
| TraesCS3B01G250700.1 | Wheat | golgi | 82.33 | 83.64 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 82.1 | 83.41 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 81.66 | 82.95 |
| Os01t0614500-01 | Rice | nucleus | 81.66 | 81.66 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 46.09 | 55.38 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 51.45 | 51.22 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 44.07 | 50.77 |
| KRH55109 | Soybean | nucleus | 49.44 | 49.77 |
| KRH26210 | Soybean | nucleus | 48.55 | 49.66 |
| CDY26001 | Canola | nucleus | 44.97 | 49.39 |
| CDY55846 | Canola | nucleus | 43.62 | 48.63 |
| Bra039664.1-P | Field mustard | nucleus | 44.97 | 48.43 |
| CDY24106 | Canola | nucleus | 44.52 | 48.18 |
| CDY25867 | Canola | nucleus | 42.73 | 47.16 |
| AT3G15010.2 | Thale cress | nucleus | 42.51 | 47.03 |
| KRH50169 | Soybean | nucleus | 40.27 | 46.88 |
| KRH71299 | Soybean | nucleus | 40.27 | 46.88 |
| Bra038113.1-P | Field mustard | nucleus | 43.18 | 46.62 |
| Solyc02g021560.2.1 | Tomato | nucleus | 44.07 | 45.71 |
| PGSC0003DMT400008213 | Potato | nucleus | 42.95 | 45.28 |
| PGSC0003DMT400039802 | Potato | nucleus | 44.97 | 45.07 |
| Solyc12g014210.1.1 | Tomato | nucleus | 33.56 | 44.78 |
| PGSC0003DMT400032256 | Potato | nucleus | 24.38 | 34.94 |
| Zm00001d052212_P001 | Maize | nucleus | 12.3 | 34.16 |
| PGSC0003DMT400031324 | Potato | cytosol | 10.07 | 32.37 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 31.32 | 30.84 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 23.49 | 28.85 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 31.77 | 27.26 |
| Zm00001d002141_P006 | Maize | nucleus | 31.54 | 27.06 |
| Zm00001d034200_P001 | Maize | nucleus | 9.62 | 25.15 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 14.99 | 24.01 |
| Zm00001d016349_P002 | Maize | nucleus | 19.91 | 23.18 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 19.24 | 20.82 |
| Zm00001d046190_P001 | Maize | extracellular | 19.46 | 20.81 |
| Zm00001d034201_P001 | Maize | nucleus | 11.63 | 20.72 |
| Zm00001d042641_P001 | Maize | nucleus | 13.65 | 20.68 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 12.75 | 20.43 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 13.42 | 20.2 |
| Zm00001d030579_P001 | Maize | mitochondrion | 15.66 | 20.11 |
| Zm00001d042042_P001 | Maize | nucleus | 15.21 | 20.0 |
| Zm00001d018103_P002 | Maize | plasma membrane | 13.87 | 19.5 |
| Zm00001d011885_P008 | Maize | cytosol | 15.44 | 19.17 |
| Zm00001d032739_P001 | Maize | nucleus | 18.79 | 18.96 |
| Zm00001d046716_P001 | Maize | nucleus | 15.21 | 18.89 |
| Zm00001d037209_P001 | Maize | plastid | 13.87 | 18.67 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 15.88 | 18.54 |
| Zm00001d019079_P001 | Maize | cytosol | 18.57 | 18.53 |
| Zm00001d019084_P002 | Maize | nucleus | 18.57 | 18.28 |
| Zm00001d007772_P001 | Maize | nucleus | 18.34 | 18.26 |
| Zm00001d014058_P002 | Maize | plastid | 19.46 | 18.05 |
| Zm00001d018730_P001 | Maize | nucleus | 14.99 | 17.91 |
| Zm00001d017829_P002 | Maize | plastid | 13.65 | 17.68 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 13.42 | 17.65 |
| Zm00001d007839_P001 | Maize | cytosol | 14.32 | 17.3 |
| Zm00001d006704_P002 | Maize | nucleus | 18.34 | 16.94 |
| Zm00001d019086_P001 | Maize | nucleus | 19.91 | 16.73 |
| Zm00001d051627_P002 | Maize | plastid | 13.42 | 16.3 |
| Zm00001d053572_P002 | Maize | cytosol | 19.69 | 16.03 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 17.9 | 14.79 |
| Zm00001d042133_P003 | Maize | cytosol | 11.41 | 12.81 |
Protein Annotations
| EntrezGene:100284566 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A096QLU9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0019013 |
| GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM41248.1 | ProteinID:ONM41249.1 |
| ProteinID:ONM41250.1 | ProteinID:ONM41254.1 | ProteinID:ONM41256.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44678 |
| PANTHER:PTHR44678:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002210785 |
| EnsemblPlantsGene:Zm00001d044469 | EnsemblPlants:Zm00001d044469_P003 | EnsemblPlants:Zm00001d044469_T003 | SEG:seg | : | : |
Description
Heterogeneous nuclear ribonucleoprotein A3-like protein 2
Coordinates
chr3:-:229010501..229015061
Molecular Weight (calculated)
44560.8 Da
IEP (calculated)
8.364
GRAVY (calculated)
-0.198
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPFSKKRKP DENGAVTASP AGGAATLGLT RDDVIRLLEP LSRDQLADIA AAAALVSSQA LDAVRAAADR DPALRKLFVR GLGWETTSDS LRAIFSAYGD
101: LEEAVVITDK PTGRSKGYGF VTFRHADSAV LALKEPSKKI DGRMTVTQLA AAGSAGGPAG GPAGSGGAPV SDVSLRKIFV GNVPADMASE RLLAHFASYG
201: EIEEGPLGFD KQTGKFRGFA LFVYKTPEGA QASLVDTVKV IDGHQLVCKL ALDGKKEKQG QSQQPGPGNH QQQQILPGGP QDIQGGLGLG SQMGAQYGVP
301: GTGMPSFGFG GVGGGFGGPN PYGNMPSSMG GGGAGGLGSM GGQVPSGLAS AGAGAFGPGG LGGGSFGVSS QFGAAGMGAY GGLGIGGGSM YRIQQGAGGL
401: PAGTFGDGGS YPPPGSGFRG QDPQGGMSPP GPGGRAPPMY PNVPPYF
101: LEEAVVITDK PTGRSKGYGF VTFRHADSAV LALKEPSKKI DGRMTVTQLA AAGSAGGPAG GPAGSGGAPV SDVSLRKIFV GNVPADMASE RLLAHFASYG
201: EIEEGPLGFD KQTGKFRGFA LFVYKTPEGA QASLVDTVKV IDGHQLVCKL ALDGKKEKQG QSQQPGPGNH QQQQILPGGP QDIQGGLGLG SQMGAQYGVP
301: GTGMPSFGFG GVGGGFGGPN PYGNMPSSMG GGGAGGLGSM GGQVPSGLAS AGAGAFGPGG LGGGSFGVSS QFGAAGMGAY GGLGIGGGSM YRIQQGAGGL
401: PAGTFGDGGS YPPPGSGFRG QDPQGGMSPP GPGGRAPPMY PNVPPYF
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.