Factsheet for Bra039664.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24106	Canola	nucleus	98.8	99.27
Bra038113.1-P	Field mustard	nucleus	82.89	83.09
AT3G15010.2	Thale cress	nucleus	72.29	74.26
GSMUA_Achr5P09550_001	Banana	nucleus	55.42	61.83
VIT_19s0014g01570.t01	Wine grape	nucleus	65.78	60.8
KRH26210	Soybean	nucleus	63.86	60.64
KRH55109	Soybean	nucleus	63.86	59.68
GSMUA_Achr5P09540_001	Banana	nucleus	51.57	55.15
PGSC0003DMT400039802	Potato	nucleus	56.63	52.69
Solyc12g014210.1.1	Tomato	nucleus	38.8	48.06
HORVU3Hr1G053990.1	Barley	nucleus	49.88	46.94
TraesCS3B01G250700.1	Wheat	golgi	49.4	46.59
Os01t0614500-01	Rice	nucleus	50.12	46.53
TraesCS3A01G220400.1	Wheat	nucleus	49.16	46.36
TraesCS3D01G232300.1	Wheat	nucleus	49.16	46.36
EES03272	Sorghum	nucleus	48.92	45.62
Zm00001d011336_P002	Maize	nucleus	48.67	45.09
Zm00001d044469_P003	Maize	nucleus	48.43	44.97
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.75	35.9
PGSC0003DMT400032256	Potato	nucleus	26.27	34.94
PGSC0003DMT400031324	Potato	cytosol	11.08	33.09
Bra007277.1-P	Field mustard	nucleus	33.49	30.96
Bra016954.1-P	Field mustard	nucleus	31.57	29.77
Bra014667.1-P	Field mustard	nucleus	21.69	29.51
PGSC0003DMT400031418	Potato	extracellular, golgi	24.82	28.3
Bra031230.1-P	Field mustard	nucleus	20.72	28.01
Bra016445.1-P	Field mustard	nucleus	17.35	27.91
Bra012254.1-P	Field mustard	nucleus	15.18	26.14
Bra025852.1-P	Field mustard	nucleus	16.39	26.05
Bra003651.1-P	Field mustard	nucleus	14.46	22.14
Bra031385.1-P	Field mustard	nucleus	15.42	22.07
Bra012350.1-P	Field mustard	nucleus	13.01	21.69
Bra007096.1-P	Field mustard	nucleus	13.49	21.62
Bra005496.1-P	Field mustard	nucleus	19.52	21.54
Bra024547.1-P	Field mustard	nucleus	12.29	21.34
Bra010203.1-P	Field mustard	nucleus	15.66	21.31
Bra012321.1-P	Field mustard	nucleus	14.7	21.11
Bra039380.1-P	Field mustard	nucleus	18.31	20.99
Bra021850.1-P	Field mustard	nucleus	18.31	20.71
Bra010757.1-P	Field mustard	nucleus	19.04	20.68
Bra030265.1-P	Field mustard	nucleus	17.83	20.22
Bra004508.1-P	Field mustard	nucleus	14.46	19.23
Bra022938.1-P	Field mustard	nucleus	18.8	19.12
Bra040485.1-P	Field mustard	nucleus	14.46	18.4
Bra029612.1-P	Field mustard	nucleus	12.29	17.77
Bra021062.1-P	Field mustard	nucleus	16.63	17.6
Bra001267.1-P	Field mustard	nucleus	19.28	16.99
Bra025568.1-P	Field mustard	nucleus	21.93	16.7
Bra040031.1-P	Field mustard	nucleus	19.28	16.46
Bra024928.1-P	Field mustard	nucleus	16.63	16.43
Bra017802.1-P	Field mustard	nucleus	16.14	16.42
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	12.29	16.35
Bra029681.1-P	Field mustard	nucleus	19.52	16.17
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	13.98	15.93
Bra017475.1-P	Field mustard	nucleus	16.14	15.69
Bra026413.1-P	Field mustard	nucleus	15.66	15.37
Bra022145.1-P	Field mustard	nucleus	16.63	15.0
Bra019094.1-P	Field mustard	nucleus	16.63	14.9
Bra028973.1-P	Field mustard	nucleus	15.42	14.78
Bra001228.1-P	Field mustard	cytosol	11.08	12.71

Protein Annotations

EnsemblPlants:Bra039664.1	EnsemblPlants:Bra039664.1-P	EnsemblPlantsGene:Bra039664	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253E7F6	UniProt:M4FEZ2	MapMan:35.1	:

Description

AT3G15010 (E=4e-101) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:651521..652768

Molecular Weight (calculated)

42320.0 Da

IEP (calculated)

9.142

GRAVY (calculated)

-0.414

Length

415 amino acids

Sequence
(BLAST)

001: MDMLKKRRLD ENGNGILNDA HITRLTPHDA RKLIERFSTD QLLDILQNAV ARHPDVLELV RSTADADITQ RKLFIRGLAA ETTTEGLRSL FSTYGDLEEA
101: IVILDKVTAK SKGYGFVTFR HVDGALLALK DPSKKIDGRV TVTQLAAAGN QGGGGAAAAA NGSDVSMRKI YVANVPVDMP ADRLLNLFLA YGEIEEGPLG
201: FDKVTGKSRG FALFVYKSPE GAQSALADPT KVIDGKHLQC KLAIDGKKGK PPGGGPGKDV AAGPGNGHGH GHGNGMGVAP PPGPYGPAVG GPGGMGGYNG
301: YSGGPPPHQM NHTPSSMGGG PGGYAGAYGG AYAGHYGGYG GPGSGGYGLG TGPGAGSGPY RMPPSSMGGS GGYPESGHYG HSSASAYPGQ HQPVGSSAAP
401: RVPPGGMYPN GPPHY

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.