Factsheet for Bra005496.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023895.1-P
Bra038436.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	Bra038436.1-P	AT1G31750.1	21798944
AT2G33410.1	Bra023895.1-P	AT3G21215.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17173	Canola	nucleus	99.73	99.47
CDY67299	Canola	nucleus	96.81	95.54
Bra021850.1-P	Field mustard	nucleus	81.38	83.38
AT2G33410.1	Thale cress	nucleus	89.1	82.92
Bra022938.1-P	Field mustard	nucleus	88.83	81.86
Bra010757.1-P	Field mustard	nucleus	57.45	56.54
VIT_05s0049g01660.t01	Wine grape	nucleus	66.76	54.09
KRH07772	Soybean	cytosol	13.83	53.06
Solyc03g005680.2.1	Tomato	nucleus	58.24	51.29
Solyc09g090520.2.1	Tomato	nucleus	64.36	50.95
PGSC0003DMT400044195	Potato	nucleus	64.36	50.95
PGSC0003DMT400035000	Potato	nucleus	59.84	50.91
KRG92276	Soybean	endoplasmic reticulum	64.36	50.84
KRH34534	Soybean	nucleus	63.3	50.53
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	9.84	47.44
TraesCS1B01G168200.1	Wheat	nucleus	56.65	47.12
TraesCS1D01G147600.1	Wheat	nucleus	56.65	46.92
TraesCS1A01G150600.1	Wheat	nucleus	56.65	46.92
KXG38359	Sorghum	nucleus	56.38	46.8
Zm00001d032739_P001	Maize	nucleus	55.05	46.73
GSMUA_Achr5P17690_001	Banana	nucleus	46.81	43.56
Zm00001d014058_P002	Maize	plastid	55.05	42.95
HORVU1Hr1G039790.1	Barley	nucleus	56.38	41.57
Bra017475.1-P	Field mustard	nucleus	37.77	33.26
Bra028973.1-P	Field mustard	nucleus	38.03	33.03
Bra026413.1-P	Field mustard	nucleus	35.9	31.91
Bra024928.1-P	Field mustard	nucleus	35.64	31.9
Bra001267.1-P	Field mustard	nucleus	39.89	31.85
Bra021062.1-P	Field mustard	nucleus	32.45	31.12
Bra039380.1-P	Field mustard	nucleus	29.79	30.94
Bra029681.1-P	Field mustard	nucleus	41.22	30.94
Bra040031.1-P	Field mustard	nucleus	39.89	30.86
Bra019094.1-P	Field mustard	nucleus	37.77	30.67
Bra022145.1-P	Field mustard	nucleus	35.64	29.13
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	26.6	27.47
Bra017802.1-P	Field mustard	nucleus	25.0	23.04
Bra025568.1-P	Field mustard	nucleus	31.91	22.02
Bra016445.1-P	Field mustard	nucleus	13.83	20.16
Bra024547.1-P	Field mustard	nucleus	12.77	20.08
Bra025852.1-P	Field mustard	nucleus	13.83	19.92
Bra039664.1-P	Field mustard	nucleus	21.54	19.52
Bra012254.1-P	Field mustard	nucleus	12.5	19.5
Bra012350.1-P	Field mustard	nucleus	12.77	19.28
Bra038113.1-P	Field mustard	nucleus	21.01	19.08
Bra003651.1-P	Field mustard	nucleus	12.5	17.34
Bra010203.1-P	Field mustard	nucleus	13.83	17.05
Bra004508.1-P	Field mustard	nucleus	14.1	16.99
Bra040485.1-P	Field mustard	nucleus	14.63	16.87
Bra007096.1-P	Field mustard	nucleus	11.44	16.6
Bra031385.1-P	Field mustard	nucleus	12.5	16.21
Bra012321.1-P	Field mustard	nucleus	12.23	15.92
Bra031230.1-P	Field mustard	nucleus	12.5	15.31
Bra007277.1-P	Field mustard	nucleus	17.29	14.48
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	11.97	14.42
Bra029612.1-P	Field mustard	nucleus	10.64	13.94
Bra016954.1-P	Field mustard	nucleus	15.96	13.64
Bra001228.1-P	Field mustard	cytosol	12.77	13.26
Bra014667.1-P	Field mustard	nucleus	10.11	12.46
Bra030265.1-P	Field mustard	nucleus	11.97	12.3

Protein Annotations

EnsemblPlants:Bra005496.1	EnsemblPlants:Bra005496.1-P	EnsemblPlantsGene:Bra005496	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00025473FB	UniProt:M4CMQ8	MapMan:35.1	:	:

Description

AT2G33410 (E=5e-104) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA05:-:5810845..5812185

Molecular Weight (calculated)

38603.9 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.675

Length

376 amino acids

Sequence
(BLAST)

001: MESDQGKLFI GGISWETDEN ILREYFSNFG EVLQVTVMRD KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSRDEQSPAG RQGGFNGNRS
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQATQRP RGFGFVSFDS EDSVDLVLHK SYHDLSGKQV EVKRALPKDA NPGVAGGGSR
201: GGGGFPGYGG SGGSGYEGRV DSSRYMPPQN AGSGGYPPYG GGYGNPSGAP YGNPGGPGAG FGSGPRPSWE GQAPSGYGNN VGYGNAAAAP WGGSGPGSVG
301: IGQGGAAAGY GSQGYGYGGN DSSYGTQSGY GAVGGRPNSH GGGYADVSDG SGGYGNHQVN GQAGYGGGYG RQAQQQ

Best Arabidopsis Sequence Match ( AT2G33410.1 )
(BLAST)

001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.