Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67299 | Canola | nucleus | 85.64 | 90.81 |
| CDX79527 | Canola | nucleus | 91.09 | 90.64 |
| CDY23739 | Canola | nucleus | 85.64 | 90.34 |
| CDX84689 | Canola | nucleus | 90.59 | 89.71 |
| CDY17173 | Canola | nucleus | 83.42 | 89.39 |
| Bra021850.1-P | Field mustard | nucleus | 81.19 | 89.37 |
| Bra022938.1-P | Field mustard | nucleus | 90.1 | 89.22 |
| Bra005496.1-P | Field mustard | nucleus | 82.92 | 89.1 |
| CDY37724 | Canola | nucleus | 70.05 | 87.62 |
| AT4G14300.1 | Thale cress | nucleus | 61.39 | 60.34 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 68.32 | 59.48 |
| KRH34534 | Soybean | nucleus | 65.84 | 56.48 |
| KRH07772 | Soybean | cytosol | 13.61 | 56.12 |
| KRG92276 | Soybean | endoplasmic reticulum | 66.09 | 56.09 |
| Solyc09g090520.2.1 | Tomato | nucleus | 65.59 | 55.79 |
| Solyc03g005680.2.1 | Tomato | nucleus | 58.91 | 55.74 |
| PGSC0003DMT400044195 | Potato | nucleus | 65.35 | 55.58 |
| PGSC0003DMT400035000 | Potato | nucleus | 60.64 | 55.43 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 57.18 | 51.11 |
| KXG38359 | Sorghum | nucleus | 57.18 | 50.99 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 57.18 | 50.88 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 57.18 | 50.88 |
| Zm00001d032739_P001 | Maize | nucleus | 55.69 | 50.79 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 48.27 | 48.27 |
| Zm00001d014058_P002 | Maize | plastid | 55.45 | 46.47 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 57.18 | 45.29 |
| AT1G17640.1 | Thale cress | nucleus | 31.19 | 34.15 |
| AT3G13224.2 | Thale cress | nucleus | 29.95 | 33.8 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 36.88 | 32.89 |
| AT4G26650.1 | Thale cress | nucleus | 36.63 | 32.53 |
| AT3G07810.2 | Thale cress | nucleus | 39.85 | 32.53 |
| AT5G40490.1 | Thale cress | nucleus | 31.93 | 30.5 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 25.99 | 29.17 |
| AT5G53720.1 | Thale cress | cytosol | 7.18 | 29.0 |
| AT5G55550.10 | Thale cress | nucleus | 36.14 | 28.8 |
| AT4G36960.2 | Thale cress | cytosol | 25.25 | 26.91 |
| AT1G33470.1 | Thale cress | cytosol | 14.36 | 23.67 |
| AT1G20880.1 | Thale cress | nucleus | 14.6 | 21.53 |
| AT5G53680.1 | Thale cress | cytosol | 8.91 | 21.3 |
| AT1G76460.1 | Thale cress | nucleus | 14.85 | 21.05 |
| AT3G15010.2 | Thale cress | nucleus | 19.31 | 19.31 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 7.92 | 18.29 |
| AT3G54770.1 | Thale cress | nucleus | 10.89 | 16.86 |
| AT1G78260.1 | Thale cress | nucleus | 11.88 | 16.72 |
| AT2G46780.1 | Thale cress | nucleus | 13.86 | 16.67 |
| AT1G22330.1 | Thale cress | nucleus | 11.88 | 16.49 |
| AT1G22910.3 | Thale cress | nucleus | 12.62 | 14.7 |
| AT2G41060.3 | Thale cress | nucleus | 16.09 | 14.41 |
| AT3G56860.10 | Thale cress | nucleus | 16.83 | 14.23 |
| AT2G22100.1 | Thale cress | nucleus | 13.37 | 14.14 |
| AT3G06970.1 | Thale cress | nucleus | 10.64 | 13.56 |
| AT2G22090.2 | Thale cress | nucleus | 11.63 | 13.54 |
| AT2G19380.1 | Thale cress | nucleus | 11.63 | 7.67 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:817905 | UniProt:A0A178VW87 | ProteinID:AAB80680.1 | ProteinID:AEC08831.1 |
| ArrayExpress:AT2G33410 | EnsemblPlantsGene:AT2G33410 | RefSeq:AT2G33410 | TAIR:AT2G33410 | RefSeq:AT2G33410-TAIR-G | EnsemblPlants:AT2G33410.1 |
| TAIR:AT2G33410.1 | EMBL:AY136298 | Unigene:At.22217 | EMBL:BT000416 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_180899.1 | InterPro:Nucleotide-bd_a/b_plait_sf | UniProt:O22791 | ProteinID:OAP09515.1 | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000AC56D | SEG:seg | : | : |
Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
Coordinates
chr2:+:14155853..14157864
Molecular Weight (calculated)
41330.9 Da
IEP (calculated)
6.524
GRAVY (calculated)
-0.648
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.