Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 16.11 | 74.36 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 68.33 | 67.77 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 68.33 | 67.58 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 67.78 | 67.03 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 67.5 | 66.94 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 63.33 | 65.9 |
| Solyc04g077520.2.1 | Tomato | nucleus | 39.17 | 41.35 |
| PGSC0003DMT400012586 | Potato | nucleus | 39.44 | 41.28 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 36.39 | 27.81 |
| AT4G14300.1 | Thale cress | nucleus | 31.67 | 27.74 |
| AT2G33410.1 | Thale cress | nucleus | 29.17 | 25.99 |
| AT3G07810.2 | Thale cress | nucleus | 34.44 | 25.05 |
| AT5G53720.1 | Thale cress | cytosol | 6.94 | 25.0 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 31.11 | 24.72 |
| AT3G13224.2 | Thale cress | nucleus | 24.44 | 24.58 |
| AT1G17640.1 | Thale cress | nucleus | 24.44 | 23.85 |
| AT4G26650.1 | Thale cress | nucleus | 29.44 | 23.3 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 20.28 | 22.53 |
| AT5G40490.1 | Thale cress | nucleus | 25.56 | 21.75 |
| AT4G36960.2 | Thale cress | cytosol | 22.5 | 21.37 |
| AT5G55550.10 | Thale cress | nucleus | 29.17 | 20.71 |
| AT1G33470.1 | Thale cress | cytosol | 12.22 | 17.96 |
| AT1G20880.1 | Thale cress | nucleus | 13.61 | 17.88 |
| AT5G53680.1 | Thale cress | cytosol | 8.33 | 17.75 |
| AT1G76460.1 | Thale cress | nucleus | 13.61 | 17.19 |
| AT3G54770.1 | Thale cress | nucleus | 11.39 | 15.71 |
| AT3G15010.2 | Thale cress | nucleus | 16.67 | 14.85 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 6.94 | 14.29 |
| AT1G78260.1 | Thale cress | nucleus | 11.39 | 14.29 |
| AT1G22330.1 | Thale cress | nucleus | 10.83 | 13.4 |
| AT2G46780.1 | Thale cress | nucleus | 11.94 | 12.8 |
| AT1G22910.3 | Thale cress | nucleus | 11.94 | 12.39 |
| AT3G06970.1 | Thale cress | nucleus | 10.83 | 12.3 |
| AT3G56860.10 | Thale cress | nucleus | 15.0 | 11.3 |
| AT2G22090.2 | Thale cress | nucleus | 10.56 | 10.95 |
| AT2G41060.3 | Thale cress | nucleus | 13.61 | 10.86 |
| AT2G22100.1 | Thale cress | nucleus | 10.28 | 9.69 |
| AT2G19380.1 | Thale cress | nucleus | 8.89 | 5.22 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:842216 | ProteinID:AAG50640.1 | EMBL:AB008022 | ProteinID:AEE33552.1 |
| ProteinID:ANM57927.1 | ArrayExpress:AT1G58470 | EnsemblPlantsGene:AT1G58470 | RefSeq:AT1G58470 | TAIR:AT1G58470 | RefSeq:AT1G58470-TAIR-G |
| EnsemblPlants:AT1G58470.2 | Symbol:ATRBP1 | EMBL:AY054536 | EMBL:AY064643 | Unigene:At.17236 | ProteinID:BAB83876.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003727 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008283 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001320402.1 |
| RefSeq:NP_176143.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | UniProt:Q9C652 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000AB4AD | SEG:seg |
Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
Coordinates
chr1:+:21726981..21728775
Molecular Weight (calculated)
40342.8 Da
IEP (calculated)
8.531
GRAVY (calculated)
-0.453
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.