Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06947 | Canola | nucleus | 72.73 | 76.28 |
| Bra016954.1-P | Field mustard | nucleus | 73.17 | 75.0 |
| CDY57580 | Canola | nucleus | 71.62 | 72.91 |
| AT3G56860.10 | Thale cress | nucleus | 70.73 | 66.74 |
| KRG94993 | Soybean | nucleus | 58.31 | 54.91 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 55.21 | 53.78 |
| KRH66628 | Soybean | nucleus | 57.65 | 53.5 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 49.22 | 47.64 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 45.45 | 45.15 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 46.56 | 43.75 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 46.34 | 43.54 |
| EES02736 | Sorghum | plastid | 44.57 | 43.32 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 43.46 | 43.27 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 46.78 | 43.24 |
| Os01t0265800-01 | Rice | nucleus | 46.12 | 42.45 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 37.69 | 39.17 |
| AT5G53720.1 | Thale cress | cytosol | 8.2 | 37.0 |
| GSMUA_Achr10P... | Banana | nucleus | 18.63 | 36.36 |
| HORVU6Hr1G054690.5 | Barley | plastid | 14.63 | 35.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.37 | 34.03 |
| AT3G15010.2 | Thale cress | nucleus | 29.27 | 32.67 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 31.93 | 32.58 |
| Os02t0602600-00 | Rice | nucleus | 27.72 | 32.38 |
| KXG30578 | Sorghum | nucleus | 25.72 | 31.18 |
| Os04t0636900-02 | Rice | nucleus | 35.48 | 31.07 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 28.16 | 30.68 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 33.48 | 29.67 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 33.48 | 29.67 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 33.48 | 29.67 |
| Zm00001d002141_P006 | Maize | nucleus | 34.15 | 29.56 |
| EES12939 | Sorghum | nucleus | 34.15 | 29.22 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 33.48 | 28.98 |
| AT2G22090.2 | Thale cress | nucleus | 20.4 | 26.51 |
| EES10068 | Sorghum | nucleus | 24.83 | 25.99 |
| AT2G22100.1 | Thale cress | nucleus | 20.4 | 24.08 |
| AT5G53680.1 | Thale cress | cytosol | 8.87 | 23.67 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 19.73 | 21.92 |
| AT5G40490.1 | Thale cress | nucleus | 19.96 | 21.28 |
| AT3G13224.2 | Thale cress | nucleus | 16.85 | 21.23 |
| AT1G20880.1 | Thale cress | nucleus | 12.64 | 20.8 |
| AT1G76460.1 | Thale cress | nucleus | 13.08 | 20.7 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 7.98 | 20.57 |
| AT1G33470.1 | Thale cress | cytosol | 10.64 | 19.59 |
| AT3G54770.1 | Thale cress | nucleus | 11.09 | 19.16 |
| AT1G17640.1 | Thale cress | nucleus | 15.52 | 18.97 |
| AT1G78260.1 | Thale cress | nucleus | 11.75 | 18.47 |
| AT4G14300.1 | Thale cress | nucleus | 16.41 | 18.0 |
| AT1G22330.1 | Thale cress | nucleus | 11.53 | 17.87 |
| AT4G36960.2 | Thale cress | cytosol | 14.86 | 17.68 |
| AT2G46780.1 | Thale cress | nucleus | 12.42 | 16.67 |
| AT2G33410.1 | Thale cress | nucleus | 14.41 | 16.09 |
| AT2G19380.1 | Thale cress | nucleus | 20.18 | 14.85 |
| AT3G07810.2 | Thale cress | nucleus | 16.19 | 14.75 |
| AT3G06970.1 | Thale cress | nucleus | 10.2 | 14.51 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 13.97 | 13.91 |
| AT4G26650.1 | Thale cress | nucleus | 13.97 | 13.85 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 10.86 | 13.61 |
| AT1G22910.3 | Thale cress | nucleus | 10.42 | 13.54 |
| AT5G55550.10 | Thale cress | nucleus | 13.75 | 12.23 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:818705 | ProteinID:AAD12005.1 | ProteinID:AEC09920.1 | ProteinID:AEC09921.1 |
| EMBL:AF439844 | EMBL:AK227158 | ProteinID:ANM62930.1 | ArrayExpress:AT2G41060 | EnsemblPlantsGene:AT2G41060 | RefSeq:AT2G41060 |
| TAIR:AT2G41060 | RefSeq:AT2G41060-TAIR-G | EnsemblPlants:AT2G41060.3 | EMBL:AY133583 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 |
| GO:GO:0009058 | GO:GO:0009693 | GO:GO:0009987 | GO:GO:0010150 | InterPro:IPR000504 | InterPro:IPR012677 |
| RefSeq:NP_001078035.1 | RefSeq:NP_001318398.1 | RefSeq:NP_181639.1 | InterPro:Nucleotide-bd_a/b_plait_sf | UniProt:O80678 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44578 | PANTHER:PTHR44578:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00000A53C1 | SEG:seg | : | : | : |
Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
Coordinates
chr2:+:17127001..17130467
Molecular Weight (calculated)
49028.8 Da
IEP (calculated)
5.849
GRAVY (calculated)
-0.818
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.