Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06947 | Canola | nucleus | 90.07 | 92.79 |
| Bra016954.1-P | Field mustard | nucleus | 92.1 | 92.73 |
| AT2G41060.3 | Thale cress | nucleus | 72.91 | 71.62 |
| CDY27186 | Canola | nucleus | 65.46 | 64.59 |
| CDX72106 | Canola | nucleus | 66.14 | 64.4 |
| CDX76015 | Canola | nucleus | 43.12 | 62.62 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 53.5 | 51.19 |
| KRG94993 | Soybean | nucleus | 54.18 | 50.1 |
| KRH66628 | Soybean | nucleus | 53.72 | 48.97 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 49.66 | 47.21 |
| CDY47382 | Canola | golgi, plastid | 42.44 | 45.19 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 45.6 | 44.49 |
| EES02736 | Sorghum | plastid | 45.37 | 43.32 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 43.34 | 42.38 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 45.82 | 42.29 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 46.5 | 42.21 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 45.6 | 42.08 |
| Os01t0265800-01 | Rice | nucleus | 46.05 | 41.63 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 38.15 | 38.94 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.26 | 36.61 |
| CDY51790 | Canola | cytosol | 8.8 | 36.45 |
| HORVU6Hr1G054690.5 | Barley | plastid | 14.9 | 35.11 |
| GSMUA_Achr10P... | Banana | nucleus | 18.28 | 35.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.51 | 33.57 |
| CDY26001 | Canola | nucleus | 30.25 | 32.92 |
| CDY55846 | Canola | nucleus | 29.8 | 32.92 |
| CDY24106 | Canola | nucleus | 30.25 | 32.45 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 32.28 | 32.35 |
| Os02t0602600-00 | Rice | nucleus | 27.54 | 31.61 |
| KXG30578 | Sorghum | nucleus | 26.41 | 31.45 |
| CDY25867 | Canola | nucleus | 28.67 | 31.36 |
| Os04t0636900-02 | Rice | nucleus | 35.67 | 30.68 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 28.67 | 30.68 |
| EES12939 | Sorghum | nucleus | 35.44 | 29.79 |
| Zm00001d002141_P006 | Maize | nucleus | 34.99 | 29.75 |
| CDY13782 | Canola | nucleus | 20.54 | 29.64 |
| CDX76950 | Canola | nucleus | 20.54 | 29.55 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 33.86 | 29.47 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 33.86 | 29.47 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 33.86 | 29.47 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 34.31 | 29.17 |
| EES10068 | Sorghum | nucleus | 25.73 | 26.45 |
| CDY31859 | Canola | nucleus | 13.09 | 24.07 |
| CDY15850 | Canola | nucleus | 20.09 | 24.05 |
| CDY31508 | Canola | nucleus | 13.09 | 23.2 |
| CDY33653 | Canola | nucleus | 13.09 | 22.92 |
| CDY01349 | Canola | nucleus | 12.42 | 22.82 |
| CDX96615 | Canola | nucleus | 12.64 | 22.22 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 20.32 | 22.17 |
| CDY29496 | Canola | nucleus | 12.87 | 21.84 |
| CDY69197 | Canola | nucleus | 11.06 | 21.78 |
| CDY02889 | Canola | nucleus | 10.61 | 21.66 |
| CDY04769 | Canola | nucleus | 11.29 | 21.1 |
| CDX73451 | Canola | cytosol | 11.74 | 20.8 |
| CDY24201 | Canola | nucleus | 16.93 | 20.72 |
| CDY43360 | Canola | nucleus | 16.93 | 20.72 |
| CDX88283 | Canola | nucleus | 13.09 | 20.71 |
| CDX78261 | Canola | nucleus | 11.96 | 20.46 |
| CDY64698 | Canola | nucleus | 11.51 | 19.54 |
| CDX73279 | Canola | cytosol | 10.61 | 19.42 |
| CDY48318 | Canola | nucleus | 16.03 | 19.09 |
| CDY41556 | Canola | nucleus | 12.42 | 18.97 |
| CDY25759 | Canola | nucleus | 10.61 | 18.88 |
| CDY26229 | Canola | nucleus | 15.8 | 18.87 |
| CDX87594 | Canola | nucleus | 13.32 | 18.44 |
| CDX75170 | Canola | extracellular | 6.77 | 18.4 |
| CDX68024 | Canola | nucleus | 11.74 | 18.37 |
| CDX88432 | Canola | nucleus | 11.51 | 17.96 |
| CDX87460 | Canola | nucleus | 11.51 | 17.89 |
| CDY12068 | Canola | nucleus | 14.45 | 17.88 |
| CDX79253 | Canola | nucleus | 11.29 | 17.86 |
| CDX80046 | Canola | nucleus | 12.42 | 17.41 |
| CDY41557 | Canola | nucleus | 12.42 | 17.41 |
| CDX90262 | Canola | nucleus | 14.67 | 17.02 |
| CDY23739 | Canola | nucleus | 14.67 | 16.97 |
| CDY46642 | Canola | nucleus | 11.06 | 16.95 |
| CDY27523 | Canola | nucleus | 12.19 | 16.72 |
| CDY48016 | Canola | nucleus | 12.19 | 16.56 |
| CDY21356 | Canola | nucleus | 10.84 | 16.55 |
| CDY50131 | Canola | nucleus | 14.22 | 16.49 |
| CDY37724 | Canola | nucleus | 11.96 | 16.41 |
| CDY42724 | Canola | cytosol | 14.0 | 16.36 |
| CDY42577 | Canola | nucleus | 20.09 | 16.33 |
| CDY67299 | Canola | nucleus | 14.0 | 16.27 |
| CDX79527 | Canola | nucleus | 14.9 | 16.26 |
| CDY36357 | Canola | nucleus | 19.86 | 16.24 |
| CDY69852 | Canola | cytosol | 14.0 | 16.23 |
| CDY17173 | Canola | nucleus | 13.54 | 15.92 |
| CDY07975 | Canola | nucleus | 16.7 | 15.71 |
| CDX74030 | Canola | nucleus | 16.7 | 15.68 |
| CDX84689 | Canola | nucleus | 14.22 | 15.44 |
| CDY22136 | Canola | nucleus | 16.93 | 15.43 |
| CDY35966 | Canola | nucleus | 16.93 | 15.18 |
| CDY66272 | Canola | nucleus | 16.7 | 15.13 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 14.0 | 15.09 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 12.19 | 14.84 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 11.51 | 14.74 |
| CDX74070 | Canola | cytosol | 11.96 | 14.72 |
| CDY08023 | Canola | nucleus | 11.96 | 14.72 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 11.96 | 14.6 |
| CDY67263 | Canola | nucleus | 10.61 | 14.33 |
| CDX94301 | Canola | nucleus | 14.22 | 14.25 |
| CDY00446 | Canola | nucleus | 10.84 | 14.12 |
| CDY41059 | Canola | nucleus | 13.54 | 14.05 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 11.51 | 14.05 |
| CDX69279 | Canola | nucleus | 7.45 | 13.98 |
| CDY05301 | Canola | nucleus | 10.84 | 13.68 |
| CDY11989 | Canola | nucleus | 13.32 | 13.66 |
| CDX77783 | Canola | nucleus | 13.09 | 13.65 |
| CDY36753 | Canola | nucleus | 13.32 | 13.56 |
| CDX92807 | Canola | nucleus | 13.77 | 13.56 |
| CDY46690 | Canola | nucleus | 13.09 | 13.55 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 12.64 | 13.49 |
| CDX89316 | Canola | endoplasmic reticulum | 13.54 | 13.42 |
| CDY46689 | Canola | nucleus | 13.77 | 13.17 |
| CDY24657 | Canola | nucleus | 9.93 | 12.94 |
| CDY28918 | Canola | mitochondrion | 13.09 | 11.98 |
| CDY25957 | Canola | nucleus | 13.32 | 10.67 |
| CDX69277 | Canola | mitochondrion | 4.29 | 10.22 |
| CDY13339 | Canola | mitochondrion | 3.84 | 10.12 |
| CDY21399 | Canola | mitochondrion | 2.93 | 8.97 |
| CDY40554 | Canola | nucleus | 12.87 | 8.69 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078IZ12 | UniProt:A0A078IZ12 | EnsemblPlants:CDY57580 | ProteinID:CDY57580 |
| ProteinID:CDY57580.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00022387001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44578 |
| PANTHER:PTHR44578:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF464D |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g56830DBnaC04g56830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZ12]
Coordinates
chrLK033586:+:37237..38979
Molecular Weight (calculated)
47645.4 Da
IEP (calculated)
6.460
GRAVY (calculated)
-0.798
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKKRKLEP QSSDATESPQ KQQLQSENGG EEIIITEIHK NENDDDRDEN QRPDGEDDDE EPIEDLLEPF SKEQLSILLK EAAEKHPDVA DRIRIAADED
101: PVHRKIFVHG FGWDTKADAL IKAFKQYGEI EDCKCVVDKV TGQSKGYGFI LFKSRSGARN ALKQPQKKIG TRMAACQLAS MGPVQGGNSV AAAGATSQHF
201: NPEHVQRKIY VSNVSADIDP ERLLEFFSRF GEVEEGPLGL DKATGRPKGF TLFVYKTAES AKKALEEPHK SFEGHVLHCH KANDGPKPVK QQHQQQRRHN
301: SYDQGSRYRR DDNAGYGASG GHGHFLGGNG NNQGLNPAIG QAITALLASQ GAGVGMNQAF GQALLGTLGA PSPGTGGGMP SGYGGQANIT PGVFPGYGYE
401: ASFQGGYQTQ LPGPGGYQTQ QPGQGGAGRG QHGLGYGGQY MGQ
101: PVHRKIFVHG FGWDTKADAL IKAFKQYGEI EDCKCVVDKV TGQSKGYGFI LFKSRSGARN ALKQPQKKIG TRMAACQLAS MGPVQGGNSV AAAGATSQHF
201: NPEHVQRKIY VSNVSADIDP ERLLEFFSRF GEVEEGPLGL DKATGRPKGF TLFVYKTAES AKKALEEPHK SFEGHVLHCH KANDGPKPVK QQHQQQRRHN
301: SYDQGSRYRR DDNAGYGASG GHGHFLGGNG NNQGLNPAIG QAITALLASQ GAGVGMNQAF GQALLGTLGA PSPGTGGGMP SGYGGQANIT PGVFPGYGYE
401: ASFQGGYQTQ LPGPGGYQTQ QPGQGGAGRG QHGLGYGGQY MGQ
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.