Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019094.1-P | Field mustard | nucleus | 99.78 | 99.78 |
| CDX92807 | Canola | nucleus | 94.82 | 97.56 |
| CDY46690 | Canola | nucleus | 86.18 | 93.22 |
| AT4G26650.1 | Thale cress | nucleus | 83.15 | 84.62 |
| CDX94301 | Canola | nucleus | 80.78 | 84.62 |
| CDX89316 | Canola | endoplasmic reticulum | 77.97 | 80.76 |
| CDY11989 | Canola | nucleus | 69.11 | 74.07 |
| CDY36753 | Canola | nucleus | 68.9 | 73.33 |
| KRG98573 | Soybean | nucleus | 55.08 | 53.24 |
| KRH14284 | Soybean | nucleus | 54.86 | 53.14 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 54.86 | 53.14 |
| KRH73860 | Soybean | nucleus | 54.0 | 52.41 |
| KRH46297 | Soybean | nucleus | 54.21 | 52.4 |
| PGSC0003DMT400037271 | Potato | nucleus | 52.48 | 51.7 |
| GSMUA_Achr10P... | Banana | nucleus | 50.97 | 51.3 |
| GSMUA_Achr10P... | Banana | nucleus | 47.95 | 50.45 |
| Solyc10g006050.2.1 | Tomato | nucleus | 46.65 | 49.88 |
| PGSC0003DMT400076643 | Potato | nucleus | 50.97 | 49.79 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 46.0 | 48.19 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 51.84 | 48.0 |
| Os11t0637700-01 | Rice | plasma membrane | 48.38 | 47.97 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 47.95 | 47.95 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 47.95 | 47.95 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 47.95 | 47.95 |
| TraesCSU01G068500.1 | Wheat | nucleus | 47.73 | 47.73 |
| Solyc12g014600.1.1 | Tomato | nucleus | 44.92 | 47.6 |
| CDY07975 | Canola | nucleus | 48.16 | 47.35 |
| CDX74030 | Canola | nucleus | 47.95 | 47.03 |
| CDY22136 | Canola | nucleus | 48.16 | 45.88 |
| Zm00001d019079_P001 | Maize | cytosol | 44.28 | 45.76 |
| Zm00001d007772_P001 | Maize | nucleus | 44.28 | 45.66 |
| Os07t0584500-01 | Rice | nucleus | 46.22 | 45.34 |
| CDY66272 | Canola | nucleus | 47.73 | 45.19 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 45.79 | 45.01 |
| CDY35966 | Canola | nucleus | 47.95 | 44.94 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 45.57 | 44.89 |
| EER98147 | Sorghum | nucleus | 43.63 | 44.59 |
| EER97452 | Sorghum | nucleus | 45.36 | 44.59 |
| CDY41059 | Canola | nucleus | 41.04 | 44.5 |
| EER96020 | Sorghum | nucleus | 43.63 | 44.4 |
| Zm00001d019084_P002 | Maize | nucleus | 43.2 | 44.05 |
| CDY50131 | Canola | nucleus | 36.07 | 43.72 |
| Zm00001d006704_P002 | Maize | nucleus | 45.14 | 43.18 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 38.01 | 42.41 |
| CDX77783 | Canola | nucleus | 38.01 | 41.41 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 36.07 | 40.63 |
| TraesCS2A01G190400.1 | Wheat | plastid | 45.36 | 39.55 |
| CDY23739 | Canola | nucleus | 32.4 | 39.16 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 45.36 | 38.82 |
| Zm00001d019086_P001 | Maize | nucleus | 44.49 | 38.72 |
| OQU83904 | Sorghum | nucleus | 37.15 | 38.22 |
| CDY28918 | Canola | mitochondrion | 39.52 | 37.81 |
| CDY67299 | Canola | nucleus | 31.1 | 37.8 |
| CDY12068 | Canola | nucleus | 29.16 | 37.71 |
| CDY17173 | Canola | nucleus | 30.45 | 37.4 |
| CDX75170 | Canola | extracellular | 12.96 | 36.81 |
| CDX84689 | Canola | nucleus | 31.97 | 36.27 |
| CDY37724 | Canola | nucleus | 25.27 | 36.22 |
| CDX79527 | Canola | nucleus | 31.75 | 36.21 |
| CDX90262 | Canola | nucleus | 29.81 | 36.13 |
| CDY25957 | Canola | nucleus | 40.6 | 34.0 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 49.68 | 33.87 |
| CDY24201 | Canola | nucleus | 24.19 | 30.94 |
| CDY43360 | Canola | nucleus | 24.19 | 30.94 |
| CDY26229 | Canola | nucleus | 24.41 | 30.46 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.34 | 30.36 |
| CDY48318 | Canola | nucleus | 24.19 | 30.11 |
| CDY51790 | Canola | cytosol | 6.91 | 29.91 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 21.6 | 28.9 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 22.46 | 28.57 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 22.25 | 28.37 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 21.6 | 27.55 |
| CDY40554 | Canola | nucleus | 38.88 | 27.44 |
| CDY42724 | Canola | cytosol | 20.09 | 24.54 |
| CDY69852 | Canola | cytosol | 20.09 | 24.35 |
| CDX69279 | Canola | nucleus | 10.8 | 21.19 |
| CDY42577 | Canola | nucleus | 24.62 | 20.92 |
| CDY69197 | Canola | nucleus | 10.15 | 20.89 |
| CDY36357 | Canola | nucleus | 24.41 | 20.85 |
| CDY02889 | Canola | nucleus | 9.72 | 20.74 |
| CDY04769 | Canola | nucleus | 10.37 | 20.25 |
| CDX73279 | Canola | cytosol | 10.15 | 19.42 |
| CDX73451 | Canola | cytosol | 9.94 | 18.4 |
| CDX78261 | Canola | nucleus | 10.15 | 18.15 |
| CDY25759 | Canola | nucleus | 9.72 | 18.07 |
| CDY31859 | Canola | nucleus | 9.29 | 17.84 |
| CDY64698 | Canola | nucleus | 9.94 | 17.62 |
| CDY31508 | Canola | nucleus | 9.5 | 17.6 |
| CDX96615 | Canola | nucleus | 9.5 | 17.46 |
| CDY01349 | Canola | nucleus | 9.07 | 17.43 |
| CDY33653 | Canola | nucleus | 9.29 | 17.0 |
| CDY55846 | Canola | nucleus | 14.69 | 16.96 |
| CDX88283 | Canola | nucleus | 10.15 | 16.79 |
| CDY41556 | Canola | nucleus | 10.37 | 16.55 |
| CDY25867 | Canola | nucleus | 14.47 | 16.54 |
| CDY29496 | Canola | nucleus | 9.29 | 16.48 |
| CDY24106 | Canola | nucleus | 14.69 | 16.46 |
| CDY26001 | Canola | nucleus | 14.47 | 16.46 |
| CDX80046 | Canola | nucleus | 11.02 | 16.14 |
| CDY41557 | Canola | nucleus | 10.8 | 15.82 |
| CDY27523 | Canola | nucleus | 10.8 | 15.48 |
| CDY48016 | Canola | nucleus | 10.8 | 15.34 |
| CDY27186 | Canola | nucleus | 14.69 | 15.14 |
| CDX76015 | Canola | nucleus | 9.94 | 15.08 |
| CDX88432 | Canola | nucleus | 9.07 | 14.79 |
| CDX87460 | Canola | nucleus | 9.07 | 14.74 |
| CDX72106 | Canola | nucleus | 14.47 | 14.73 |
| CDX76950 | Canola | nucleus | 9.72 | 14.61 |
| CDY21399 | Canola | mitochondrion | 4.54 | 14.48 |
| CDX87594 | Canola | nucleus | 9.94 | 14.38 |
| CDY13782 | Canola | nucleus | 9.5 | 14.33 |
| CDY67263 | Canola | nucleus | 10.15 | 14.33 |
| CDX79253 | Canola | nucleus | 8.64 | 14.29 |
| CDY21356 | Canola | nucleus | 8.86 | 14.14 |
| CDY46642 | Canola | nucleus | 8.64 | 13.84 |
| CDX68024 | Canola | nucleus | 8.42 | 13.78 |
| CDY57580 | Canola | nucleus | 13.17 | 13.77 |
| CDY06947 | Canola | nucleus | 12.74 | 13.72 |
| CDX69277 | Canola | mitochondrion | 5.18 | 12.9 |
| CDY00446 | Canola | nucleus | 9.07 | 12.35 |
| CDY08023 | Canola | nucleus | 9.29 | 11.94 |
| CDY15850 | Canola | nucleus | 9.5 | 11.89 |
| CDY24657 | Canola | nucleus | 8.64 | 11.76 |
| CDX74070 | Canola | cytosol | 8.86 | 11.39 |
| CDY47382 | Canola | golgi, plastid | 10.15 | 11.3 |
| CDY05301 | Canola | nucleus | 8.21 | 10.83 |
| CDY13339 | Canola | mitochondrion | 3.89 | 10.71 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078IBH2 | UniProt:A0A078IBH2 | EnsemblPlants:CDY46689 | ProteinID:CDY46689 |
| ProteinID:CDY46689.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00085993001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE220E | SEG:seg | : | : | : | : |
Description
BnaA03g48190DBnaA03g48190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBH2]
Coordinates
chrLK032681:-:160903..163351
Molecular Weight (calculated)
50282.6 Da
IEP (calculated)
7.367
GRAVY (calculated)
-0.641
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVSDLGKL FIGGISWDTD EERLREYFSK YGDLVESVIM RDRTTGRARG FGFIVFADPS VAERVILEKH IIDGRTVEAK KAVPRDDQQV LKRHASPMHL
101: ISSSPSQHGG GSNRTKKIFV GGLPSSITEA EFKNYFDQFG TIADVVVMYD HNTQRPRGFG FITFDSEESV DMVLHKTFHE LNGKMVEVKR AVPKEPSSSS
201: ALPLAANRSP LLGGYGGNNY GVVVPNRPSG NNSYFNSFAP GYNSNNIGRF SPIGSGRNAF SSNFGLGLNQ ELSLNSSFDG NTTLGYNNRI PGNQYFNNAS
301: PNRYNNSPIG FNRGDSAYNP SNRDLLWGNR TDSSGPGWNL GVSVGNNRGN WGLSDANGYG RSFGTSSGLS ALPFSGSNNN NNNTNGFDGS IGEMYRGNSV
401: YSDSTWQQAM PHQSANELDG LSRSYGFGFD NVASDPSGNA SEGYPRSYSV GGNRGWYTHS SAS
101: ISSSPSQHGG GSNRTKKIFV GGLPSSITEA EFKNYFDQFG TIADVVVMYD HNTQRPRGFG FITFDSEESV DMVLHKTFHE LNGKMVEVKR AVPKEPSSSS
201: ALPLAANRSP LLGGYGGNNY GVVVPNRPSG NNSYFNSFAP GYNSNNIGRF SPIGSGRNAF SSNFGLGLNQ ELSLNSSFDG NTTLGYNNRI PGNQYFNNAS
301: PNRYNNSPIG FNRGDSAYNP SNRDLLWGNR TDSSGPGWNL GVSVGNNRGN WGLSDANGYG RSFGTSSGLS ALPFSGSNNN NNNTNGFDGS IGEMYRGNSV
401: YSDSTWQQAM PHQSANELDG LSRSYGFGFD NVASDPSGNA SEGYPRSYSV GGNRGWYTHS SAS
001: MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
Arabidopsis Description
AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.