Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G197500.2 | Wheat | nucleus | 98.51 | 98.72 |
| Os07t0584500-01 | Rice | nucleus | 89.38 | 89.19 |
| TraesCS2A01G190400.1 | Wheat | plastid | 98.73 | 87.57 |
| EER97452 | Sorghum | nucleus | 85.56 | 85.56 |
| Zm00001d006704_P002 | Maize | nucleus | 84.5 | 82.23 |
| Zm00001d019079_P001 | Maize | cytosol | 77.28 | 81.25 |
| EER98147 | Sorghum | nucleus | 77.28 | 80.35 |
| EER96020 | Sorghum | nucleus | 77.49 | 80.22 |
| Zm00001d007772_P001 | Maize | nucleus | 75.16 | 78.84 |
| Zm00001d019084_P002 | Maize | nucleus | 73.25 | 75.99 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 84.08 | 73.2 |
| Zm00001d019086_P001 | Maize | nucleus | 77.07 | 68.23 |
| Solyc04g014820.2.1 | Tomato | cytosol | 33.12 | 58.21 |
| GSMUA_Achr10P... | Banana | nucleus | 53.93 | 57.73 |
| KRH74025 | Soybean | nucleus | 57.54 | 57.05 |
| KRH14098 | Soybean | nucleus | 57.32 | 56.37 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 57.11 | 56.28 |
| PGSC0003DMT400076643 | Potato | nucleus | 56.48 | 56.12 |
| PGSC0003DMT400037271 | Potato | nucleus | 55.84 | 55.96 |
| GSMUA_Achr10P... | Banana | nucleus | 54.56 | 55.87 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 56.69 | 55.86 |
| KRG98573 | Soybean | nucleus | 55.84 | 54.91 |
| KRH46297 | Soybean | nucleus | 55.63 | 54.7 |
| Solyc12g014600.1.1 | Tomato | nucleus | 50.74 | 54.69 |
| Solyc07g048030.2.1 | Tomato | nucleus | 50.53 | 54.46 |
| KRH73860 | Soybean | nucleus | 54.99 | 54.3 |
| Solyc10g006050.2.1 | Tomato | nucleus | 49.89 | 54.27 |
| KRH14284 | Soybean | nucleus | 54.56 | 53.77 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 50.32 | 53.62 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 55.84 | 52.6 |
| PGSC0003DMT400034757 | Potato | nucleus | 52.02 | 52.35 |
| PGSC0003DMT400074192 | Potato | nucleus | 52.65 | 52.32 |
| Solyc11g012470.1.1 | Tomato | nucleus | 46.92 | 51.64 |
| Solyc12g006180.1.1 | Tomato | nucleus | 47.56 | 51.14 |
| CDY07975 | Canola | nucleus | 50.11 | 50.11 |
| CDX74030 | Canola | nucleus | 50.11 | 50.0 |
| Bra001267.1-P | Field mustard | nucleus | 49.89 | 49.89 |
| PGSC0003DMT400060554 | Potato | nucleus | 49.47 | 49.57 |
| Bra040031.1-P | Field mustard | nucleus | 50.32 | 48.77 |
| CDY22136 | Canola | nucleus | 50.32 | 48.77 |
| AT3G07810.2 | Thale cress | nucleus | 51.17 | 48.69 |
| AT4G26650.1 | Thale cress | nucleus | 46.71 | 48.35 |
| CDY66272 | Canola | nucleus | 49.89 | 48.06 |
| CDY35966 | Canola | nucleus | 50.32 | 47.98 |
| CDY36753 | Canola | nucleus | 44.16 | 47.82 |
| Bra028973.1-P | Field mustard | nucleus | 43.95 | 47.81 |
| Bra029681.1-P | Field mustard | nucleus | 50.74 | 47.7 |
| CDY11989 | Canola | nucleus | 43.31 | 47.22 |
| Bra024928.1-P | Field mustard | nucleus | 42.04 | 47.14 |
| Bra017475.1-P | Field mustard | nucleus | 42.68 | 47.07 |
| CDY41059 | Canola | nucleus | 42.68 | 47.07 |
| CDX94301 | Canola | nucleus | 44.16 | 47.06 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 41.4 | 46.99 |
| CDX77783 | Canola | nucleus | 42.04 | 46.59 |
| CDX92807 | Canola | nucleus | 44.37 | 46.44 |
| CDY50131 | Canola | nucleus | 37.58 | 46.34 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 44.37 | 46.14 |
| CDX89316 | Canola | endoplasmic reticulum | 43.74 | 46.09 |
| CDY46690 | Canola | nucleus | 41.83 | 46.03 |
| Bra021062.1-P | Field mustard | nucleus | 38.22 | 45.92 |
| CDY46689 | Canola | nucleus | 45.01 | 45.79 |
| Bra019094.1-P | Field mustard | nucleus | 45.01 | 45.79 |
| Bra026413.1-P | Field mustard | nucleus | 40.55 | 45.15 |
| Bra022145.1-P | Field mustard | nucleus | 43.52 | 44.57 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 38.22 | 43.8 |
| CDY28918 | Canola | mitochondrion | 44.16 | 42.98 |
| AT5G55550.10 | Thale cress | nucleus | 45.44 | 42.21 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 56.9 | 39.47 |
| CDX75170 | Canola | extracellular | 13.38 | 38.65 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 35.67 | 37.17 |
| CDY25957 | Canola | nucleus | 42.68 | 36.35 |
| CDY40554 | Canola | nucleus | 43.52 | 31.25 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 23.99 | 30.29 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 23.57 | 29.37 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 21.23 | 28.09 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 24.2 | 27.54 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 19.11 | 25.64 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 19.11 | 24.66 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 19.32 | 24.4 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 12.53 | 19.93 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 11.25 | 19.41 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 11.68 | 19.3 |
| TraesCS3B01G250700.1 | Wheat | golgi | 17.41 | 18.64 |
| TraesCS6B01G306600.1 | Wheat | plastid | 11.04 | 18.25 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 11.89 | 17.95 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 11.25 | 17.73 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 11.25 | 17.67 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 15.71 | 16.34 |
| TraesCS6B01G348100.1 | Wheat | plastid | 10.62 | 16.08 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 15.29 | 14.15 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G216600.2 | EnsemblPlantsGene:TraesCS2B01G216600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:DAZAP1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF4 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:cd12327 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:202739368..202742839
Molecular Weight (calculated)
50433.5 Da
IEP (calculated)
6.273
GRAVY (calculated)
-0.519
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADSGKLFV GGISWETDED RLREYFGRFG EVTEAVIMRD RNTGRARGFG FIVFAEAGVA ERVTMDKHMI DGRMVEAKKA VPRDDQSIAS KNNGSSIGSP
101: GPVRTRKIFV GGLASNVTEV EFRRYFEQFG MITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALHKNFHE LNGKMVEVKR AVPKEQSPGP VARSPAGGQN
201: LAISRVHNFL NGFNQGYSPN PIGGYGMRVD GRFGLLSGAR NGFSSFGPSY GMGMNVETGM NANFGANSSF LNNSNGRQMG SYYNGGSNRL GSPIGYVGLN
301: DDSGSILSSM GRNVWGNGNV NYQNSPTNMS SFVPSGSGSQ VGITGDGINW GGPTSAHGMG SISSLGSNIG RGAGDNFGLP SGGYGRSNPT GTIGEPFSAS
401: ANAYEMNNID TYGNNSIYGD STWRFTSSEI DIPPFDNDLG NIDPDIKSNM PASYMGNYTV NNNQTSRGIT S
101: GPVRTRKIFV GGLASNVTEV EFRRYFEQFG MITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALHKNFHE LNGKMVEVKR AVPKEQSPGP VARSPAGGQN
201: LAISRVHNFL NGFNQGYSPN PIGGYGMRVD GRFGLLSGAR NGFSSFGPSY GMGMNVETGM NANFGANSSF LNNSNGRQMG SYYNGGSNRL GSPIGYVGLN
301: DDSGSILSSM GRNVWGNGNV NYQNSPTNMS SFVPSGSGSQ VGITGDGINW GGPTSAHGMG SISSLGSNIG RGAGDNFGLP SGGYGRSNPT GTIGEPFSAS
401: ANAYEMNNID TYGNNSIYGD STWRFTSSEI DIPPFDNDLG NIDPDIKSNM PASYMGNYTV NNNQTSRGIT S
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.