Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41059 | Canola | nucleus | 73.24 | 94.85 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 63.47 | 84.58 |
| CDX77783 | Canola | nucleus | 63.65 | 82.82 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 64.2 | 78.37 |
| CDY28918 | Canola | mitochondrion | 66.55 | 76.03 |
| CDY50131 | Canola | nucleus | 44.48 | 64.4 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 45.21 | 60.83 |
| CDY40554 | Canola | nucleus | 66.37 | 55.95 |
| GSMUA_Achr10P... | Banana | nucleus | 37.43 | 47.05 |
| GSMUA_Achr10P... | Banana | nucleus | 37.97 | 45.65 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 37.61 | 44.92 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 37.43 | 44.71 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 37.43 | 44.71 |
| TraesCSU01G068500.1 | Wheat | nucleus | 37.43 | 44.71 |
| Os11t0637700-01 | Rice | plasma membrane | 37.43 | 44.33 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 39.6 | 43.8 |
| Os07t0584500-01 | Rice | nucleus | 37.07 | 43.43 |
| CDX74030 | Canola | nucleus | 36.89 | 43.22 |
| CDX94301 | Canola | nucleus | 34.54 | 43.21 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 34.54 | 43.21 |
| CDY07975 | Canola | nucleus | 36.71 | 43.1 |
| Zm00001d007772_P001 | Maize | nucleus | 34.72 | 42.76 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 36.35 | 42.68 |
| Zm00001d019079_P001 | Maize | cytosol | 34.54 | 42.63 |
| CDY11989 | Canola | nucleus | 33.27 | 42.59 |
| CDY22136 | Canola | nucleus | 37.25 | 42.39 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 35.99 | 42.34 |
| CDY36753 | Canola | nucleus | 33.27 | 42.3 |
| EER96020 | Sorghum | nucleus | 34.72 | 42.2 |
| EER98147 | Sorghum | nucleus | 34.36 | 41.94 |
| CDY66272 | Canola | nucleus | 37.07 | 41.92 |
| CDX92807 | Canola | nucleus | 34.0 | 41.78 |
| CDX89316 | Canola | endoplasmic reticulum | 33.63 | 41.61 |
| EER97452 | Sorghum | nucleus | 35.26 | 41.4 |
| CDY46690 | Canola | nucleus | 32.01 | 41.36 |
| CDY35966 | Canola | nucleus | 36.89 | 41.3 |
| CDY46689 | Canola | nucleus | 34.0 | 40.6 |
| Zm00001d019084_P002 | Maize | nucleus | 32.91 | 40.09 |
| CDX75170 | Canola | extracellular | 11.75 | 39.88 |
| Zm00001d006704_P002 | Maize | nucleus | 34.9 | 39.88 |
| CDY12068 | Canola | nucleus | 24.95 | 38.55 |
| CDY17173 | Canola | nucleus | 25.68 | 37.67 |
| CDY67299 | Canola | nucleus | 25.86 | 37.53 |
| CDY23739 | Canola | nucleus | 25.86 | 37.34 |
| TraesCS2A01G190400.1 | Wheat | plastid | 35.8 | 37.29 |
| Zm00001d019086_P001 | Maize | nucleus | 35.62 | 37.03 |
| CDX90262 | Canola | nucleus | 25.32 | 36.65 |
| OQU83904 | Sorghum | nucleus | 29.48 | 36.22 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 35.26 | 36.04 |
| CDX84689 | Canola | nucleus | 26.58 | 36.03 |
| CDX79527 | Canola | nucleus | 26.4 | 35.96 |
| CDY37724 | Canola | nucleus | 20.25 | 34.67 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 39.6 | 32.25 |
| CDY26229 | Canola | nucleus | 20.61 | 30.73 |
| CDY48318 | Canola | nucleus | 20.61 | 30.65 |
| CDY24201 | Canola | nucleus | 19.89 | 30.39 |
| CDY43360 | Canola | nucleus | 19.89 | 30.39 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 18.99 | 28.93 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 18.99 | 28.85 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 17.54 | 28.03 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 18.26 | 27.82 |
| CDY51790 | Canola | cytosol | 5.24 | 27.1 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 5.42 | 26.79 |
| CDY42724 | Canola | cytosol | 17.0 | 24.8 |
| CDY69852 | Canola | cytosol | 17.0 | 24.61 |
| CDY42577 | Canola | nucleus | 23.51 | 23.85 |
| CDY36357 | Canola | nucleus | 23.33 | 23.8 |
| CDY04769 | Canola | nucleus | 9.58 | 22.36 |
| CDY69197 | Canola | nucleus | 8.86 | 21.78 |
| CDY31508 | Canola | nucleus | 9.76 | 21.6 |
| CDY25759 | Canola | nucleus | 9.58 | 21.29 |
| CDY33653 | Canola | nucleus | 9.58 | 20.95 |
| CDX69279 | Canola | nucleus | 8.86 | 20.76 |
| CDY01349 | Canola | nucleus | 9.04 | 20.75 |
| CDY31859 | Canola | nucleus | 9.04 | 20.75 |
| CDX73279 | Canola | cytosol | 9.04 | 20.66 |
| CDY29496 | Canola | nucleus | 9.58 | 20.31 |
| CDX96615 | Canola | nucleus | 9.22 | 20.24 |
| CDX88283 | Canola | nucleus | 9.95 | 19.64 |
| CDY02889 | Canola | nucleus | 7.59 | 19.35 |
| CDX87594 | Canola | nucleus | 10.31 | 17.81 |
| CDX68024 | Canola | nucleus | 8.86 | 17.31 |
| CDX88432 | Canola | nucleus | 8.86 | 17.25 |
| CDY41556 | Canola | nucleus | 9.04 | 17.24 |
| CDX73451 | Canola | cytosol | 7.78 | 17.2 |
| CDX87460 | Canola | nucleus | 8.86 | 17.19 |
| CDX79253 | Canola | nucleus | 8.68 | 17.14 |
| CDY26001 | Canola | nucleus | 12.3 | 16.71 |
| CDY21356 | Canola | nucleus | 8.68 | 16.55 |
| CDY24106 | Canola | nucleus | 12.3 | 16.46 |
| CDY67263 | Canola | nucleus | 9.76 | 16.46 |
| CDY08023 | Canola | nucleus | 10.67 | 16.39 |
| CDY25867 | Canola | nucleus | 11.93 | 16.3 |
| CDX78261 | Canola | nucleus | 7.59 | 16.22 |
| CDY55846 | Canola | nucleus | 11.75 | 16.21 |
| CDX80046 | Canola | nucleus | 9.22 | 16.14 |
| CDY27523 | Canola | nucleus | 9.4 | 16.1 |
| CDY48016 | Canola | nucleus | 9.4 | 15.95 |
| CDY46642 | Canola | nucleus | 8.32 | 15.92 |
| CDX74070 | Canola | cytosol | 10.31 | 15.83 |
| CDY41557 | Canola | nucleus | 9.04 | 15.82 |
| CDY64698 | Canola | nucleus | 7.23 | 15.33 |
| CDY21399 | Canola | mitochondrion | 3.98 | 15.17 |
| CDY27186 | Canola | nucleus | 11.75 | 14.48 |
| CDY13782 | Canola | nucleus | 7.96 | 14.33 |
| CDX72106 | Canola | nucleus | 11.75 | 14.29 |
| CDX69277 | Canola | mitochondrion | 4.7 | 13.98 |
| CDX76950 | Canola | nucleus | 7.78 | 13.96 |
| CDY00446 | Canola | nucleus | 8.5 | 13.82 |
| CDX76015 | Canola | nucleus | 7.59 | 13.77 |
| CDY24657 | Canola | nucleus | 8.32 | 13.53 |
| CDY05301 | Canola | nucleus | 8.5 | 13.39 |
| CDY57580 | Canola | nucleus | 10.67 | 13.32 |
| CDY13339 | Canola | mitochondrion | 3.98 | 13.1 |
| CDY06947 | Canola | nucleus | 10.13 | 13.02 |
| CDY15850 | Canola | nucleus | 7.59 | 11.35 |
| CDY47382 | Canola | golgi, plastid | 8.5 | 11.3 |
Protein Annotations
| MapMan:2.4.1.4.2.4 | Gene3D:3.30.70.330 | GO:A0A078GLB9 | UniProt:A0A078GLB9 | EnsemblPlants:CDY25957 | ProteinID:CDY25957 |
| ProteinID:CDY25957.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00033468001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EEED10 | SEG:seg | : | : | : | : |
Description
BnaC09g20300DBnaC09g20300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLB9]
Coordinates
chrLK032183:+:306403..311284
Molecular Weight (calculated)
59269.3 Da
IEP (calculated)
8.532
GRAVY (calculated)
-0.209
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMESSCKLF IGGISWETTE DRLREYFQSF GEVLEAVIMK DRATGRARGF GFLVFADPTV AERVVLIRHV IDGKIVEAKK AVPRDDHVVL NRSSSSLQGS
101: PGPATSKKIF VGGLASSVTE AEFKKYFAQF GTITDVVVMY DHRTQRPRGF GFISFESEEA VDRVLQRTFH ELNGKMVEVK LAVPKEMALN PIRNQMNVNS
201: FGSSRISALL MNEYTQGFSQ SPISGYGVQP EVRYSPGVGG NRGGFSPFGH GFGIELNFEP GHYGSGSNAG FGRPFSPGYA ASQGRYGSQI ESGVRNNLWG
301: NGGGLGGYMS NSPISRSSFN GNSGMSSLGS IGDNWGGAAR ARSGYRSEGG GLGLDAMRGV HVGGYSSGSS SLETESLYSD SAWLSPPAKS EERLGMGAFD
401: FVSKGPAAGY INRQPNGDVG QACRLSKMAG RLFGVASRIM GGNGVVARSG AASLRQRAGM GLPVGKHIVP DKRLSVNDEL MWDNGTAFPE PCIDRIADTV
501: GKYEALGWLC GGLGFFATLG LLAVVNDKAS KVPFVSDLYF NHCCIHHPFL LFD
101: PGPATSKKIF VGGLASSVTE AEFKKYFAQF GTITDVVVMY DHRTQRPRGF GFISFESEEA VDRVLQRTFH ELNGKMVEVK LAVPKEMALN PIRNQMNVNS
201: FGSSRISALL MNEYTQGFSQ SPISGYGVQP EVRYSPGVGG NRGGFSPFGH GFGIELNFEP GHYGSGSNAG FGRPFSPGYA ASQGRYGSQI ESGVRNNLWG
301: NGGGLGGYMS NSPISRSSFN GNSGMSSLGS IGDNWGGAAR ARSGYRSEGG GLGLDAMRGV HVGGYSSGSS SLETESLYSD SAWLSPPAKS EERLGMGAFD
401: FVSKGPAAGY INRQPNGDVG QACRLSKMAG RLFGVASRIM GGNGVVARSG AASLRQRAGM GLPVGKHIVP DKRLSVNDEL MWDNGTAFPE PCIDRIADTV
501: GKYEALGWLC GGLGFFATLG LLAVVNDKAS KVPFVSDLYF NHCCIHHPFL LFD
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.