Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039664.1-P | Field mustard | nucleus | 99.27 | 98.8 |
| CDY26001 | Canola | nucleus | 94.92 | 96.31 |
| CDY55846 | Canola | nucleus | 82.57 | 85.04 |
| CDY25867 | Canola | nucleus | 80.63 | 82.22 |
| AT3G15010.2 | Thale cress | nucleus | 72.4 | 74.01 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 55.45 | 61.56 |
| KRH26210 | Soybean | nucleus | 63.92 | 60.41 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 65.38 | 60.13 |
| KRH55109 | Soybean | nucleus | 63.92 | 59.46 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 51.33 | 54.64 |
| PGSC0003DMT400039802 | Potato | nucleus | 56.42 | 52.24 |
| Solyc12g014210.1.1 | Tomato | nucleus | 38.5 | 47.46 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 49.88 | 46.71 |
| TraesCS3B01G250700.1 | Wheat | golgi | 49.39 | 46.36 |
| Os01t0614500-01 | Rice | nucleus | 50.12 | 46.31 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 49.15 | 46.14 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 49.15 | 46.14 |
| EES03272 | Sorghum | nucleus | 48.91 | 45.39 |
| Zm00001d011336_P002 | Maize | nucleus | 48.67 | 44.87 |
| Zm00001d044469_P003 | Maize | nucleus | 48.18 | 44.52 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.44 | 34.82 |
| PGSC0003DMT400032256 | Potato | nucleus | 26.15 | 34.62 |
| CDY51790 | Canola | cytosol | 8.96 | 34.58 |
| PGSC0003DMT400031324 | Potato | cytosol | 10.9 | 32.37 |
| CDX76015 | Canola | nucleus | 23.0 | 31.15 |
| CDY27186 | Canola | nucleus | 33.66 | 30.96 |
| CDX72106 | Canola | nucleus | 33.9 | 30.77 |
| CDY57580 | Canola | nucleus | 32.45 | 30.25 |
| CDY06947 | Canola | nucleus | 31.48 | 30.23 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 24.94 | 28.3 |
| CDY33653 | Canola | nucleus | 17.19 | 28.06 |
| CDX76950 | Canola | nucleus | 20.82 | 27.92 |
| CDY13782 | Canola | nucleus | 20.58 | 27.69 |
| CDX96615 | Canola | nucleus | 16.46 | 26.98 |
| CDY31859 | Canola | nucleus | 15.74 | 26.97 |
| CDY31508 | Canola | nucleus | 16.22 | 26.8 |
| CDY29496 | Canola | nucleus | 16.46 | 26.05 |
| CDY01349 | Canola | nucleus | 15.01 | 25.73 |
| CDX73279 | Canola | cytosol | 14.77 | 25.21 |
| CDX88283 | Canola | nucleus | 16.22 | 23.93 |
| CDY02889 | Canola | nucleus | 11.86 | 22.58 |
| CDX88432 | Canola | nucleus | 15.5 | 22.54 |
| CDX87460 | Canola | nucleus | 15.5 | 22.46 |
| CDY47382 | Canola | golgi, plastid | 22.52 | 22.36 |
| CDX79253 | Canola | nucleus | 15.01 | 22.14 |
| CDY26229 | Canola | nucleus | 19.85 | 22.1 |
| CDY48318 | Canola | nucleus | 19.85 | 22.04 |
| CDY64698 | Canola | nucleus | 13.8 | 21.84 |
| CDY21356 | Canola | nucleus | 15.25 | 21.72 |
| CDX78261 | Canola | nucleus | 13.56 | 21.62 |
| CDX73451 | Canola | cytosol | 13.08 | 21.6 |
| CDY17173 | Canola | nucleus | 19.61 | 21.49 |
| CDY69197 | Canola | nucleus | 11.62 | 21.33 |
| CDY46642 | Canola | nucleus | 14.77 | 21.11 |
| CDY04769 | Canola | nucleus | 12.11 | 21.1 |
| CDY67299 | Canola | nucleus | 19.37 | 21.0 |
| CDY24201 | Canola | nucleus | 18.4 | 20.99 |
| CDY43360 | Canola | nucleus | 18.4 | 20.99 |
| CDX87594 | Canola | nucleus | 16.22 | 20.94 |
| CDY25759 | Canola | nucleus | 12.59 | 20.88 |
| CDX75170 | Canola | extracellular | 8.23 | 20.86 |
| CDX68024 | Canola | nucleus | 14.29 | 20.85 |
| CDY37724 | Canola | nucleus | 16.22 | 20.74 |
| CDX90262 | Canola | nucleus | 19.13 | 20.68 |
| CDY23739 | Canola | nucleus | 19.13 | 20.63 |
| CDY12068 | Canola | nucleus | 17.43 | 20.11 |
| CDY41556 | Canola | nucleus | 14.04 | 20.0 |
| CDX79527 | Canola | nucleus | 19.61 | 19.95 |
| CDY15850 | Canola | nucleus | 17.68 | 19.73 |
| CDX84689 | Canola | nucleus | 19.13 | 19.36 |
| CDX80046 | Canola | nucleus | 14.29 | 18.67 |
| CDY41557 | Canola | nucleus | 14.29 | 18.67 |
| CDY42724 | Canola | cytosol | 16.95 | 18.47 |
| CDY69852 | Canola | cytosol | 16.95 | 18.32 |
| CDY48016 | Canola | nucleus | 14.29 | 18.1 |
| CDY27523 | Canola | nucleus | 14.04 | 17.96 |
| CDY00446 | Canola | nucleus | 14.77 | 17.94 |
| CDY50131 | Canola | nucleus | 16.22 | 17.54 |
| CDY07975 | Canola | nucleus | 18.89 | 16.56 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 16.46 | 16.55 |
| CDX74030 | Canola | nucleus | 18.89 | 16.53 |
| CDY42577 | Canola | nucleus | 21.79 | 16.51 |
| CDY67263 | Canola | nucleus | 13.08 | 16.46 |
| CDY66272 | Canola | nucleus | 19.37 | 16.36 |
| CDY22136 | Canola | nucleus | 19.13 | 16.26 |
| CDY36357 | Canola | nucleus | 21.31 | 16.24 |
| CDY35966 | Canola | nucleus | 19.37 | 16.19 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.22 | 16.14 |
| CDX77783 | Canola | nucleus | 16.46 | 16.0 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 14.04 | 15.98 |
| CDY05301 | Canola | nucleus | 13.56 | 15.95 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 14.04 | 15.93 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.32 | 15.9 |
| CDY24657 | Canola | nucleus | 13.08 | 15.88 |
| CDY41059 | Canola | nucleus | 16.22 | 15.69 |
| CDX94301 | Canola | nucleus | 16.22 | 15.16 |
| CDX92807 | Canola | nucleus | 16.46 | 15.11 |
| CDY46690 | Canola | nucleus | 15.5 | 14.95 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 13.08 | 14.88 |
| CDX89316 | Canola | endoplasmic reticulum | 15.98 | 14.77 |
| CDY46689 | Canola | nucleus | 16.46 | 14.69 |
| CDY11989 | Canola | nucleus | 15.25 | 14.58 |
| CDY36753 | Canola | nucleus | 14.77 | 14.02 |
| CDX69279 | Canola | nucleus | 7.99 | 13.98 |
| CDY28918 | Canola | mitochondrion | 16.22 | 13.84 |
| CDY08023 | Canola | nucleus | 11.86 | 13.61 |
| CDX74070 | Canola | cytosol | 11.62 | 13.33 |
| CDY13339 | Canola | mitochondrion | 5.08 | 12.5 |
| CDY25957 | Canola | nucleus | 16.46 | 12.3 |
| CDX69277 | Canola | mitochondrion | 4.6 | 10.22 |
| CDY40554 | Canola | nucleus | 15.98 | 10.06 |
| CDY21399 | Canola | mitochondrion | 3.15 | 8.97 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GFG1 | UniProt:A0A078GFG1 | EnsemblPlants:CDY24106 | ProteinID:CDY24106 |
| ProteinID:CDY24106.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00024654001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44678 |
| PANTHER:PTHR44678:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEB68C |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g01040DBnaA06g01040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFG1]
Coordinates
chrLK032153:+:489032..491158
Molecular Weight (calculated)
42140.9 Da
IEP (calculated)
9.409
GRAVY (calculated)
-0.414
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMLKKRRLD ENGNGILNDA HITRLTPHDA RKLIERFSTD QLLDILQNAV ARHPDVLELV RSTADADITQ RKLFIRGLAA ETTTEGLRSL FSTYGDLEKA
101: IVILDKVTAK SKGYGFVTFR HVDGALLALK DPSKKIDGRV TVTQLAAAGN QGGGGTAAAA NGSDVSMRKI YVANVPVDMP ADRLLNLFVA YGEIEEGPLG
201: FDKVTGKSRG FALFVYKSPE GAQSALADPT KVIDGKHLQC KLAIDGKKGK PPGGGPGKDV AAGPGNGHGH GNGMGVAPPP GPYGPAVGGP GGMGGYNGYS
301: GGPPPHQMNH TPSSMGGGPG GYAGAYGGAY AGHYGGYGGP GSGGYGLGTG PGAGSGPYRM PPSSMGGSGG YPESGHYGHS SASAYPGQHQ PVGSSAAPRV
401: PPGGMYPNGP PHY
101: IVILDKVTAK SKGYGFVTFR HVDGALLALK DPSKKIDGRV TVTQLAAAGN QGGGGTAAAA NGSDVSMRKI YVANVPVDMP ADRLLNLFVA YGEIEEGPLG
201: FDKVTGKSRG FALFVYKSPE GAQSALADPT KVIDGKHLQC KLAIDGKKGK PPGGGPGKDV AAGPGNGHGH GNGMGVAPPP GPYGPAVGGP GGMGGYNGYS
301: GGPPPHQMNH TPSSMGGGPG GYAGAYGGAY AGHYGGYGGP GSGGYGLGTG PGAGSGPYRM PPSSMGGSGG YPESGHYGHS SASAYPGQHQ PVGSSAAPRV
401: PPGGMYPNGP PHY
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Arabidopsis Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.