Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76015 | Canola | nucleus | 59.62 | 81.31 |
| CDY27186 | Canola | nucleus | 52.64 | 48.78 |
| CDX72106 | Canola | nucleus | 52.64 | 48.13 |
| AT3G56860.10 | Thale cress | nucleus | 52.64 | 45.82 |
| CDY06947 | Canola | nucleus | 43.99 | 42.56 |
| CDY57580 | Canola | nucleus | 45.19 | 42.44 |
| KRG94993 | Soybean | nucleus | 41.83 | 36.33 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 39.42 | 35.42 |
| KRH66628 | Soybean | nucleus | 41.11 | 35.19 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 36.54 | 33.48 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 36.3 | 32.4 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.65 | 32.14 |
| EES02736 | Sorghum | plastid | 35.82 | 32.11 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 34.62 | 31.79 |
| CDY51790 | Canola | cytosol | 7.93 | 30.84 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 35.34 | 30.62 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 35.1 | 30.42 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 35.58 | 30.33 |
| Os01t0265800-01 | Rice | nucleus | 35.1 | 29.8 |
| CDY13782 | Canola | nucleus | 20.67 | 28.01 |
| CDX76950 | Canola | nucleus | 20.43 | 27.6 |
| GSMUA_Achr10P... | Banana | nucleus | 15.14 | 27.27 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 28.12 | 26.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.48 | 24.71 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 25.24 | 23.76 |
| Os02t0602600-00 | Rice | nucleus | 20.91 | 22.54 |
| CDY24106 | Canola | nucleus | 22.36 | 22.52 |
| CDY26001 | Canola | nucleus | 21.88 | 22.36 |
| CDY25867 | Canola | nucleus | 21.39 | 21.98 |
| CDY55846 | Canola | nucleus | 21.15 | 21.95 |
| HORVU6Hr1G054690.5 | Barley | plastid | 9.86 | 21.81 |
| KXG30578 | Sorghum | nucleus | 19.23 | 21.51 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 20.67 | 20.77 |
| EES12939 | Sorghum | nucleus | 25.96 | 20.49 |
| Zm00001d002141_P006 | Maize | nucleus | 25.48 | 20.35 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 25.48 | 20.35 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 24.76 | 20.24 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 24.76 | 20.24 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 24.76 | 20.24 |
| Os04t0636900-02 | Rice | nucleus | 25.0 | 20.19 |
| CDY15850 | Canola | nucleus | 17.79 | 20.0 |
| EES10068 | Sorghum | nucleus | 20.43 | 19.72 |
| CDY31859 | Canola | nucleus | 10.1 | 17.43 |
| CDX96615 | Canola | nucleus | 9.86 | 16.27 |
| CDY33653 | Canola | nucleus | 9.86 | 16.21 |
| CDY01349 | Canola | nucleus | 9.38 | 16.18 |
| CDY31508 | Canola | nucleus | 9.38 | 15.6 |
| CDY02889 | Canola | nucleus | 7.93 | 15.21 |
| CDY29496 | Canola | nucleus | 9.38 | 14.94 |
| CDX73451 | Canola | cytosol | 8.89 | 14.8 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 14.42 | 14.78 |
| CDX78261 | Canola | nucleus | 9.13 | 14.67 |
| CDX88283 | Canola | nucleus | 9.86 | 14.64 |
| CDX73279 | Canola | cytosol | 8.41 | 14.46 |
| CDY69197 | Canola | nucleus | 7.69 | 14.22 |
| CDY64698 | Canola | nucleus | 8.89 | 14.18 |
| CDX75170 | Canola | extracellular | 5.53 | 14.11 |
| CDX88432 | Canola | nucleus | 9.62 | 14.08 |
| CDX87460 | Canola | nucleus | 9.62 | 14.04 |
| CDY37724 | Canola | nucleus | 10.82 | 13.93 |
| CDY04769 | Canola | nucleus | 7.93 | 13.92 |
| CDY24201 | Canola | nucleus | 12.02 | 13.81 |
| CDY43360 | Canola | nucleus | 12.02 | 13.81 |
| CDX79253 | Canola | nucleus | 9.13 | 13.57 |
| CDY21356 | Canola | nucleus | 9.38 | 13.45 |
| CDY12068 | Canola | nucleus | 11.54 | 13.41 |
| CDY23739 | Canola | nucleus | 12.26 | 13.32 |
| CDY25759 | Canola | nucleus | 7.93 | 13.25 |
| CDY26229 | Canola | nucleus | 11.78 | 13.21 |
| CDY48318 | Canola | nucleus | 11.78 | 13.17 |
| CDY46642 | Canola | nucleus | 9.13 | 13.15 |
| CDY41556 | Canola | nucleus | 9.13 | 13.1 |
| CDX68024 | Canola | nucleus | 8.89 | 13.07 |
| CDX90262 | Canola | nucleus | 11.78 | 12.83 |
| CDX87594 | Canola | nucleus | 9.86 | 12.81 |
| CDY27523 | Canola | nucleus | 9.86 | 12.69 |
| CDX80046 | Canola | nucleus | 9.62 | 12.66 |
| CDY41557 | Canola | nucleus | 9.62 | 12.66 |
| CDY48016 | Canola | nucleus | 9.86 | 12.58 |
| CDX79527 | Canola | nucleus | 11.54 | 11.82 |
| CDY24657 | Canola | nucleus | 9.62 | 11.76 |
| CDY05301 | Canola | nucleus | 9.86 | 11.68 |
| CDX74070 | Canola | cytosol | 10.1 | 11.67 |
| CDY08023 | Canola | nucleus | 10.1 | 11.67 |
| CDY67299 | Canola | nucleus | 10.58 | 11.55 |
| CDX84689 | Canola | nucleus | 11.3 | 11.52 |
| CDY17173 | Canola | nucleus | 10.34 | 11.41 |
| CDY00446 | Canola | nucleus | 9.13 | 11.18 |
| CDY11989 | Canola | nucleus | 11.54 | 11.11 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 9.62 | 11.02 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 9.62 | 11.02 |
| CDY41059 | Canola | nucleus | 11.3 | 11.01 |
| CDY50131 | Canola | nucleus | 10.1 | 10.99 |
| CDX94301 | Canola | nucleus | 11.54 | 10.86 |
| CDY42724 | Canola | cytosol | 9.86 | 10.82 |
| CDY69852 | Canola | cytosol | 9.86 | 10.73 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 9.38 | 10.71 |
| CDY22136 | Canola | nucleus | 12.5 | 10.7 |
| CDY36753 | Canola | nucleus | 11.06 | 10.57 |
| CDX92807 | Canola | nucleus | 11.3 | 10.44 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 8.65 | 10.4 |
| CDY07975 | Canola | nucleus | 11.78 | 10.4 |
| CDX74030 | Canola | nucleus | 11.78 | 10.38 |
| CDY67263 | Canola | nucleus | 8.17 | 10.37 |
| CDY36357 | Canola | nucleus | 13.46 | 10.33 |
| CDY35966 | Canola | nucleus | 12.26 | 10.32 |
| CDY46690 | Canola | nucleus | 10.58 | 10.28 |
| CDY42577 | Canola | nucleus | 13.46 | 10.28 |
| CDY66272 | Canola | nucleus | 12.02 | 10.22 |
| CDY46689 | Canola | nucleus | 11.3 | 10.15 |
| CDX89316 | Canola | endoplasmic reticulum | 10.82 | 10.07 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 9.86 | 9.98 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 9.86 | 9.88 |
| CDX77783 | Canola | nucleus | 9.86 | 9.65 |
| CDX69279 | Canola | nucleus | 5.05 | 8.9 |
| CDY28918 | Canola | mitochondrion | 10.34 | 8.88 |
| CDY25957 | Canola | nucleus | 11.3 | 8.5 |
| CDY13339 | Canola | mitochondrion | 2.88 | 7.14 |
| CDY40554 | Canola | nucleus | 10.82 | 6.86 |
| CDX69277 | Canola | mitochondrion | 2.88 | 6.45 |
| CDY21399 | Canola | mitochondrion | 2.16 | 6.21 |
Protein Annotations
| EnsemblPlants:CDY47382 | EnsemblPlantsGene:GSBRNA2T00087281001 | Gene3D:3.30.70.330 | GO:A0A078IB40 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44578 | PANTHER:PTHR44578:SF1 | ProteinID:CDY47382 | ProteinID:CDY47382.1 | SignalP:SignalP-noTM | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EE935C | UniProt:A0A078IB40 | MapMan:35.1 | : | : |
Description
BnaC04g24810DBnaC04g24810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB40]
Coordinates
chrLK032713:-:88975..104754
Molecular Weight (calculated)
46305.7 Da
IEP (calculated)
7.154
GRAVY (calculated)
-0.492
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLGISFIFI FFWTGRSLES RRSRTRVLWD PVHSSENFET LKSPPLWFPP LLRRESSNDQ TEEQIETNKQ VNQANGDQVE EDPIQDLLEP FSKEQLLDLL
101: KQAAENHPDV ANRIREVADE DPSHRKIFVH GLGWDTKTET LIEAFNQYGE IEDCKASRSG ARNALKQPQK KIGSRTTSCQ LACKGPVFGG NAVEGLSVEH
201: TQRKIYVSNV GVELDPEKLL AFFSRFGEEP HKTFEGHVLH CQKAIDGPKQ GKQQQFNTPN HNNPRYGAPG GFMAGHQPGM GAPAQGMDPA IGQALTALLV
301: SQGAGLGFNP ALGQAFGYDS TTWSGRYSNE NRLLSIYFPW NRHMNFPCLN PHGLLPVRWF GAKPLFPIQC GANFCSCIGN AQVVTERSEA RSGFGVLMQA
401: VHKRYSGAME NFGISV
101: KQAAENHPDV ANRIREVADE DPSHRKIFVH GLGWDTKTET LIEAFNQYGE IEDCKASRSG ARNALKQPQK KIGSRTTSCQ LACKGPVFGG NAVEGLSVEH
201: TQRKIYVSNV GVELDPEKLL AFFSRFGEEP HKTFEGHVLH CQKAIDGPKQ GKQQQFNTPN HNNPRYGAPG GFMAGHQPGM GAPAQGMDPA IGQALTALLV
301: SQGAGLGFNP ALGQAFGYDS TTWSGRYSNE NRLLSIYFPW NRHMNFPCLN PHGLLPVRWF GAKPLFPIQC GANFCSCIGN AQVVTERSEA RSGFGVLMQA
401: VHKRYSGAME NFGISV
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.