Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007277.1-P | Field mustard | nucleus | 96.48 | 97.77 |
| CDY27186 | Canola | nucleus | 95.38 | 96.66 |
| AT3G56860.10 | Thale cress | nucleus | 85.93 | 81.8 |
| CDX76015 | Canola | nucleus | 50.99 | 76.07 |
| CDY06947 | Canola | nucleus | 63.08 | 66.74 |
| CDY57580 | Canola | nucleus | 64.4 | 66.14 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 59.12 | 58.1 |
| KRG94993 | Soybean | nucleus | 60.88 | 57.83 |
| KRH66628 | Soybean | nucleus | 60.66 | 56.79 |
| CDY47382 | Canola | golgi, plastid | 48.13 | 52.64 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 50.55 | 49.36 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 48.13 | 48.24 |
| EES02736 | Sorghum | plastid | 47.03 | 46.12 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 45.27 | 45.47 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 47.69 | 45.21 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 47.47 | 45.0 |
| Os01t0265800-01 | Rice | nucleus | 47.91 | 44.49 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 47.47 | 44.26 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 39.78 | 41.71 |
| CDY51790 | Canola | cytosol | 8.79 | 37.38 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.01 | 36.61 |
| CDY55846 | Canola | nucleus | 30.55 | 34.66 |
| GSMUA_Achr10P... | Banana | nucleus | 17.36 | 34.2 |
| HORVU6Hr1G054690.5 | Barley | plastid | 14.07 | 34.04 |
| CDY24106 | Canola | nucleus | 30.77 | 33.9 |
| CDY26001 | Canola | nucleus | 30.11 | 33.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.65 | 33.57 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 32.53 | 33.48 |
| CDY25867 | Canola | nucleus | 29.67 | 33.33 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 30.11 | 33.09 |
| Os02t0602600-00 | Rice | nucleus | 27.25 | 32.12 |
| KXG30578 | Sorghum | nucleus | 26.15 | 31.99 |
| Zm00001d002141_P006 | Maize | nucleus | 36.26 | 31.67 |
| Os04t0636900-02 | Rice | nucleus | 35.82 | 31.65 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 35.38 | 31.63 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 35.38 | 31.63 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 35.16 | 31.43 |
| CDY13782 | Canola | nucleus | 21.1 | 31.27 |
| EES12939 | Sorghum | nucleus | 35.82 | 30.93 |
| CDX76950 | Canola | nucleus | 20.88 | 30.84 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 34.95 | 30.52 |
| EES10068 | Sorghum | nucleus | 25.93 | 27.38 |
| CDY15850 | Canola | nucleus | 21.98 | 27.03 |
| CDY31859 | Canola | nucleus | 12.97 | 24.48 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 21.54 | 24.14 |
| CDY33653 | Canola | nucleus | 12.75 | 22.92 |
| CDY01349 | Canola | nucleus | 12.09 | 22.82 |
| CDY31508 | Canola | nucleus | 12.53 | 22.8 |
| CDX96615 | Canola | nucleus | 12.31 | 22.22 |
| CDY24201 | Canola | nucleus | 17.36 | 21.82 |
| CDY43360 | Canola | nucleus | 17.36 | 21.82 |
| CDY02889 | Canola | nucleus | 10.33 | 21.66 |
| CDY29496 | Canola | nucleus | 12.31 | 21.46 |
| CDY69197 | Canola | nucleus | 10.55 | 21.33 |
| CDX75170 | Canola | extracellular | 7.47 | 20.86 |
| CDX73451 | Canola | cytosol | 11.43 | 20.8 |
| CDY04769 | Canola | nucleus | 10.77 | 20.68 |
| CDX88283 | Canola | nucleus | 12.53 | 20.36 |
| CDY64698 | Canola | nucleus | 11.65 | 20.31 |
| CDX78261 | Canola | nucleus | 11.43 | 20.08 |
| CDY48318 | Canola | nucleus | 16.26 | 19.89 |
| CDX73279 | Canola | cytosol | 10.55 | 19.83 |
| CDY25759 | Canola | nucleus | 10.77 | 19.68 |
| CDY26229 | Canola | nucleus | 16.04 | 19.68 |
| CDX79253 | Canola | nucleus | 11.87 | 19.29 |
| CDX88432 | Canola | nucleus | 11.87 | 19.01 |
| CDX87460 | Canola | nucleus | 11.87 | 18.95 |
| CDX90262 | Canola | nucleus | 15.82 | 18.85 |
| CDX68024 | Canola | nucleus | 11.65 | 18.73 |
| CDY12068 | Canola | nucleus | 14.73 | 18.72 |
| CDY21356 | Canola | nucleus | 11.87 | 18.62 |
| CDY46642 | Canola | nucleus | 11.65 | 18.34 |
| CDY23739 | Canola | nucleus | 15.16 | 18.02 |
| CDX87594 | Canola | nucleus | 12.53 | 17.81 |
| CDY50131 | Canola | nucleus | 14.95 | 17.8 |
| CDY67299 | Canola | nucleus | 14.73 | 17.59 |
| CDY37724 | Canola | nucleus | 12.31 | 17.34 |
| CDX79527 | Canola | nucleus | 15.38 | 17.24 |
| CDY17173 | Canola | nucleus | 14.29 | 17.24 |
| CDY41556 | Canola | nucleus | 10.99 | 17.24 |
| CDY42724 | Canola | cytosol | 14.29 | 17.15 |
| CDY69852 | Canola | cytosol | 14.29 | 17.02 |
| CDX84689 | Canola | nucleus | 14.73 | 16.42 |
| CDY36357 | Canola | nucleus | 19.56 | 16.42 |
| CDY42577 | Canola | nucleus | 19.56 | 16.33 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 14.73 | 16.3 |
| CDX80046 | Canola | nucleus | 10.99 | 15.82 |
| CDY41557 | Canola | nucleus | 10.99 | 15.82 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 11.87 | 15.61 |
| CDY07975 | Canola | nucleus | 16.04 | 15.5 |
| CDX74030 | Canola | nucleus | 16.04 | 15.47 |
| CDY22136 | Canola | nucleus | 16.48 | 15.43 |
| CDY41059 | Canola | nucleus | 14.29 | 15.22 |
| CDY27523 | Canola | nucleus | 10.77 | 15.17 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 12.09 | 15.15 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 12.09 | 15.11 |
| CDY48016 | Canola | nucleus | 10.77 | 15.03 |
| CDX74070 | Canola | cytosol | 11.87 | 15.0 |
| CDY00446 | Canola | nucleus | 11.21 | 15.0 |
| CDY08023 | Canola | nucleus | 11.87 | 15.0 |
| CDY46690 | Canola | nucleus | 14.07 | 14.95 |
| CDY67263 | Canola | nucleus | 10.77 | 14.94 |
| CDX92807 | Canola | nucleus | 14.73 | 14.89 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 11.87 | 14.88 |
| CDY11989 | Canola | nucleus | 14.07 | 14.81 |
| CDY35966 | Canola | nucleus | 16.04 | 14.78 |
| CDY66272 | Canola | nucleus | 15.82 | 14.72 |
| CDX94301 | Canola | nucleus | 14.29 | 14.71 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 13.41 | 14.7 |
| CDY46689 | Canola | nucleus | 14.73 | 14.47 |
| CDX69279 | Canola | nucleus | 7.47 | 14.41 |
| CDY05301 | Canola | nucleus | 10.99 | 14.24 |
| CDX77783 | Canola | nucleus | 13.19 | 14.12 |
| CDY24657 | Canola | nucleus | 10.55 | 14.12 |
| CDY36753 | Canola | nucleus | 13.41 | 14.02 |
| CDX89316 | Canola | endoplasmic reticulum | 13.63 | 13.87 |
| CDY28918 | Canola | mitochondrion | 13.85 | 13.02 |
| CDX69277 | Canola | mitochondrion | 5.05 | 12.37 |
| CDY25957 | Canola | nucleus | 14.29 | 11.75 |
| CDY13339 | Canola | mitochondrion | 3.74 | 10.12 |
| CDY40554 | Canola | nucleus | 14.29 | 9.91 |
| CDY21399 | Canola | mitochondrion | 2.64 | 8.28 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078C519 | EnsemblPlants:CDX72106 | ProteinID:CDX72106 | ProteinID:CDX72106.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00155909001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44578 |
| PANTHER:PTHR44578:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDE316 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g27680D
Coordinates
chrLK031795:+:2414873..2416941
Molecular Weight (calculated)
48504.6 Da
IEP (calculated)
5.338
GRAVY (calculated)
-0.689
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKRKLEAQ LSEASEPSQK QIAINNQVKQ EVEYEEVDEE HEEEVEDDDD NDDEEENENR MVVAATSGSG NQGGDDDDDE PIQDLLEPFS KEQLLNLLKE
101: AAEKHHDVAN RIREVADEDP VHRKIFVHGL GWDTKTETLI EAFKEYGEIE DCKAVFDKVS GKSKGYGFIL FKSRSGARNA LKQPQKKIGS RMTACQLASK
201: GPVFGGNNPV AAAGASIAPA QHSNSEHTQK KIYVSNVGAE LDPQKLLAFF SKFGEIEEGP LGLDKYTGRP KGFCLFVYKS AESAKKALEE PHKSFEGHIL
301: HCQKAIDGPK PGKPQQFNSN PRFQRNDNSG GYGTPAGHGH LMAGNQAGMG APVQAMNPAI GQALTALLAS QGGLAFNPAI GQALLGSLGA AGGVNPGAGV
401: GMPTGYGTQP MTPGSIPGYG GQPGLQGGYQ TPPPGQGGTG RGQHGVGHYT PYMGQ
101: AAEKHHDVAN RIREVADEDP VHRKIFVHGL GWDTKTETLI EAFKEYGEIE DCKAVFDKVS GKSKGYGFIL FKSRSGARNA LKQPQKKIGS RMTACQLASK
201: GPVFGGNNPV AAAGASIAPA QHSNSEHTQK KIYVSNVGAE LDPQKLLAFF SKFGEIEEGP LGLDKYTGRP KGFCLFVYKS AESAKKALEE PHKSFEGHIL
301: HCQKAIDGPK PGKPQQFNSN PRFQRNDNSG GYGTPAGHGH LMAGNQAGMG APVQAMNPAI GQALTALLAS QGGLAFNPAI GQALLGSLGA AGGVNPGAGV
401: GMPTGYGTQP MTPGSIPGYG GQPGLQGGYQ TPPPGQGGTG RGQHGVGHYT PYMGQ
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.