Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46689 | Canola | nucleus | 97.56 | 94.82 |
| Bra019094.1-P | Field mustard | nucleus | 97.33 | 94.6 |
| CDY46690 | Canola | nucleus | 85.78 | 90.19 |
| AT4G26650.1 | Thale cress | nucleus | 85.11 | 84.18 |
| CDX94301 | Canola | nucleus | 82.0 | 83.48 |
| CDX89316 | Canola | endoplasmic reticulum | 80.0 | 80.54 |
| CDY11989 | Canola | nucleus | 70.89 | 73.84 |
| CDY36753 | Canola | nucleus | 70.0 | 72.41 |
| KRH14284 | Soybean | nucleus | 56.89 | 53.56 |
| KRG98573 | Soybean | nucleus | 56.44 | 53.03 |
| KRH73860 | Soybean | nucleus | 56.0 | 52.83 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 56.0 | 52.72 |
| KRH46297 | Soybean | nucleus | 56.0 | 52.61 |
| PGSC0003DMT400037271 | Potato | nucleus | 53.56 | 51.28 |
| GSMUA_Achr10P... | Banana | nucleus | 52.0 | 50.87 |
| GSMUA_Achr10P... | Banana | nucleus | 49.11 | 50.23 |
| Solyc10g006050.2.1 | Tomato | nucleus | 48.0 | 49.88 |
| PGSC0003DMT400076643 | Potato | nucleus | 52.0 | 49.37 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 53.33 | 48.0 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 46.67 | 47.51 |
| Os11t0637700-01 | Rice | plasma membrane | 49.11 | 47.32 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 48.67 | 47.3 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 48.67 | 47.3 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 48.67 | 47.3 |
| Solyc12g014600.1.1 | Tomato | nucleus | 45.78 | 47.14 |
| TraesCSU01G068500.1 | Wheat | nucleus | 48.44 | 47.08 |
| CDY07975 | Canola | nucleus | 49.11 | 46.92 |
| CDX74030 | Canola | nucleus | 48.89 | 46.61 |
| CDY22136 | Canola | nucleus | 49.56 | 45.88 |
| Zm00001d019079_P001 | Maize | cytosol | 45.56 | 45.76 |
| Zm00001d007772_P001 | Maize | nucleus | 45.56 | 45.66 |
| CDY66272 | Canola | nucleus | 49.33 | 45.4 |
| CDY35966 | Canola | nucleus | 49.56 | 45.14 |
| Os07t0584500-01 | Rice | nucleus | 47.33 | 45.13 |
| CDY41059 | Canola | nucleus | 42.67 | 44.96 |
| EER98147 | Sorghum | nucleus | 44.89 | 44.59 |
| EER96020 | Sorghum | nucleus | 44.89 | 44.4 |
| EER97452 | Sorghum | nucleus | 46.44 | 44.37 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 46.44 | 44.37 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 46.22 | 44.26 |
| Zm00001d019084_P002 | Maize | nucleus | 44.44 | 44.05 |
| CDY50131 | Canola | nucleus | 37.33 | 43.98 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 39.78 | 43.13 |
| Zm00001d006704_P002 | Maize | nucleus | 46.22 | 42.98 |
| CDX77783 | Canola | nucleus | 39.78 | 42.12 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.33 | 40.88 |
| TraesCS2A01G190400.1 | Wheat | plastid | 46.0 | 38.98 |
| Zm00001d019086_P001 | Maize | nucleus | 45.56 | 38.53 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 46.22 | 38.45 |
| CDY23739 | Canola | nucleus | 32.67 | 38.38 |
| CDY28918 | Canola | mitochondrion | 41.11 | 38.22 |
| CDY12068 | Canola | nucleus | 30.0 | 37.71 |
| OQU83904 | Sorghum | nucleus | 37.56 | 37.56 |
| CDY67299 | Canola | nucleus | 31.56 | 37.27 |
| CDY17173 | Canola | nucleus | 31.11 | 37.14 |
| CDX75170 | Canola | extracellular | 13.33 | 36.81 |
| CDX90262 | Canola | nucleus | 30.67 | 36.13 |
| CDX84689 | Canola | nucleus | 32.67 | 36.03 |
| CDX79527 | Canola | nucleus | 32.44 | 35.96 |
| CDY37724 | Canola | nucleus | 25.33 | 35.29 |
| CDY25957 | Canola | nucleus | 41.78 | 34.0 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 50.67 | 33.58 |
| CDY24201 | Canola | nucleus | 24.67 | 30.66 |
| CDY43360 | Canola | nucleus | 24.67 | 30.66 |
| CDY26229 | Canola | nucleus | 25.11 | 30.46 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.56 | 30.36 |
| CDY48318 | Canola | nucleus | 24.89 | 30.11 |
| CDY51790 | Canola | cytosol | 7.11 | 29.91 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.0 | 28.61 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 23.11 | 28.57 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 22.89 | 28.37 |
| CDY40554 | Canola | nucleus | 40.44 | 27.74 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 22.22 | 27.55 |
| CDY42724 | Canola | cytosol | 20.22 | 24.01 |
| CDY69852 | Canola | cytosol | 20.22 | 23.82 |
| CDX69279 | Canola | nucleus | 11.11 | 21.19 |
| CDY42577 | Canola | nucleus | 25.33 | 20.92 |
| CDY36357 | Canola | nucleus | 25.11 | 20.85 |
| CDY02889 | Canola | nucleus | 9.78 | 20.28 |
| CDY69197 | Canola | nucleus | 9.56 | 19.11 |
| CDX73279 | Canola | cytosol | 10.22 | 19.01 |
| CDY04769 | Canola | nucleus | 9.78 | 18.57 |
| CDX73451 | Canola | cytosol | 10.0 | 18.0 |
| CDX78261 | Canola | nucleus | 10.22 | 17.76 |
| CDY25759 | Canola | nucleus | 9.78 | 17.67 |
| CDY31859 | Canola | nucleus | 9.33 | 17.43 |
| CDY64698 | Canola | nucleus | 10.0 | 17.24 |
| CDY31508 | Canola | nucleus | 9.56 | 17.2 |
| CDX96615 | Canola | nucleus | 9.56 | 17.06 |
| CDY01349 | Canola | nucleus | 9.11 | 17.01 |
| CDY55846 | Canola | nucleus | 15.11 | 16.96 |
| CDY33653 | Canola | nucleus | 9.33 | 16.6 |
| CDY25867 | Canola | nucleus | 14.89 | 16.54 |
| CDY24106 | Canola | nucleus | 15.11 | 16.46 |
| CDY26001 | Canola | nucleus | 14.89 | 16.46 |
| CDX88283 | Canola | nucleus | 10.22 | 16.43 |
| CDY29496 | Canola | nucleus | 9.33 | 16.09 |
| CDY41556 | Canola | nucleus | 10.22 | 15.86 |
| CDX80046 | Canola | nucleus | 10.89 | 15.51 |
| CDY41557 | Canola | nucleus | 10.67 | 15.19 |
| CDY27186 | Canola | nucleus | 15.11 | 15.14 |
| CDX76015 | Canola | nucleus | 10.22 | 15.08 |
| CDY27523 | Canola | nucleus | 10.67 | 14.86 |
| CDX88432 | Canola | nucleus | 9.33 | 14.79 |
| CDX87460 | Canola | nucleus | 9.33 | 14.74 |
| CDX72106 | Canola | nucleus | 14.89 | 14.73 |
| CDY48016 | Canola | nucleus | 10.67 | 14.72 |
| CDX76950 | Canola | nucleus | 10.0 | 14.61 |
| CDY13782 | Canola | nucleus | 9.78 | 14.33 |
| CDX79253 | Canola | nucleus | 8.89 | 14.29 |
| CDY21356 | Canola | nucleus | 9.11 | 14.14 |
| CDX87594 | Canola | nucleus | 10.0 | 14.06 |
| CDY46642 | Canola | nucleus | 8.89 | 13.84 |
| CDX68024 | Canola | nucleus | 8.67 | 13.78 |
| CDY57580 | Canola | nucleus | 13.56 | 13.77 |
| CDY06947 | Canola | nucleus | 13.11 | 13.72 |
| CDY67263 | Canola | nucleus | 10.0 | 13.72 |
| CDY00446 | Canola | nucleus | 9.78 | 12.94 |
| CDX69277 | Canola | mitochondrion | 5.33 | 12.9 |
| CDY08023 | Canola | nucleus | 9.56 | 11.94 |
| CDY15850 | Canola | nucleus | 9.78 | 11.89 |
| CDY24657 | Canola | nucleus | 8.89 | 11.76 |
| CDY21399 | Canola | mitochondrion | 3.78 | 11.72 |
| CDX74070 | Canola | cytosol | 9.11 | 11.39 |
| CDY47382 | Canola | golgi, plastid | 10.44 | 11.3 |
| CDY05301 | Canola | nucleus | 8.44 | 10.83 |
| CDY13339 | Canola | mitochondrion | 3.78 | 10.12 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078DV90 | EnsemblPlants:CDX92807 | ProteinID:CDX92807 | ProteinID:CDX92807.1 |
| InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00154636001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE8078 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g40650D
Coordinates
chrLK031873:-:887656..890050
Molecular Weight (calculated)
48936.2 Da
IEP (calculated)
6.736
GRAVY (calculated)
-0.631
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVSDLGKL FIGGISWDTD EERLREYFSK YGDLVESVIM RDRTTGRARG FGFIVFADPS VAERVILEKH IIDGRTVEAK KAVPRDDQQV LKRHASPMHL
101: ISSPSQHGGG SNRTKKIFVG GLPSSITEAE FKNYFDQFGT IADVVVMYDH NTQRPRGFGF ITFDSEESVD MVLHKTFHEL NGKMVEVKRA VPKEPSSSSA
201: PLAANRSPLL GGYGGNNYGV VVPNRPSGNN SYFNSFAPGY NSNNIGRFSP IGSGRNAFSN NFGLGLNQEL SFDGNTTLGF SRIPGSQYFN NASPNRYNNS
301: PIGFNRGDSA YNPSNRDLLW GNRTDSSGPG WNLGVSVGNN RGNWGLSDAN SYGRSFGTSS GLSALPFSDS NNNNNTNGFD GSMGEMYRGN SVYSDSTWQQ
401: AMPHQSANEL DGLSRSYGFG FDNVASDPSG NASEGYPRSY NVGGNRGIEA
101: ISSPSQHGGG SNRTKKIFVG GLPSSITEAE FKNYFDQFGT IADVVVMYDH NTQRPRGFGF ITFDSEESVD MVLHKTFHEL NGKMVEVKRA VPKEPSSSSA
201: PLAANRSPLL GGYGGNNYGV VVPNRPSGNN SYFNSFAPGY NSNNIGRFSP IGSGRNAFSN NFGLGLNQEL SFDGNTTLGF SRIPGSQYFN NASPNRYNNS
301: PIGFNRGDSA YNPSNRDLLW GNRTDSSGPG WNLGVSVGNN RGNWGLSDAN SYGRSFGTSS GLSALPFSDS NNNNNTNGFD GSMGEMYRGN SVYSDSTWQQ
401: AMPHQSANEL DGLSRSYGFG FDNVASDPSG NASEGYPRSY NVGGNRGIEA
001: MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
Arabidopsis Description
AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.